Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KZZ19_RS18375 Genome accession   NZ_CP155559
Coordinates   3567175..3568206 (-) Length   343 a.a.
NCBI ID   WP_088097465.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3562175..3573206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS18355 (KZZ19_018350) - 3562788..3563711 (-) 924 WP_237979308.1 dipeptidase -
  KZZ19_RS18360 (KZZ19_018355) spoVS 3563770..3564030 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  KZZ19_RS18365 (KZZ19_018360) - 3564180..3564974 (-) 795 WP_001221093.1 TIGR00282 family metallophosphoesterase -
  KZZ19_RS18370 (KZZ19_018365) rny 3565129..3566694 (-) 1566 WP_016086643.1 ribonuclease Y -
  KZZ19_RS18375 (KZZ19_018370) recA 3567175..3568206 (-) 1032 WP_088097465.1 recombinase RecA Machinery gene
  KZZ19_RS18380 (KZZ19_018375) cinA 3568351..3569589 (-) 1239 WP_237979310.1 competence/damage-inducible protein CinA Machinery gene
  KZZ19_RS18385 (KZZ19_018380) pgsA 3569610..3570188 (-) 579 WP_046956497.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KZZ19_RS18390 (KZZ19_018385) - 3570252..3571163 (-) 912 WP_237979312.1 RodZ domain-containing protein -
  KZZ19_RS18395 (KZZ19_018390) - 3571185..3571970 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  KZZ19_RS18400 (KZZ19_018395) - 3572109..3572357 (-) 249 WP_000114455.1 DUF3243 domain-containing protein -
  KZZ19_RS18405 (KZZ19_018400) - 3572433..3573146 (-) 714 WP_237979314.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37314.23 Da        Isoelectric Point: 4.9057

>NTDB_id=997754 KZZ19_RS18375 WP_088097465.1 3567175..3568206(-) (recA) [Bacillus thuringiensis strain HSY204]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VRDHHGIGEDSGAEDTEDSTLQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=997754 KZZ19_RS18375 WP_088097465.1 3567175..3568206(-) (recA) [Bacillus thuringiensis strain HSY204]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATCGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCTGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTTATTGATGCGGAGCATGCGATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATAGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTGGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTGCCGAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAGCTATCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTTCGTCTTGAAGTACGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGGGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AGCGTTTAGGGCAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGACCATCACGGAATTGGTGAAGACTCTGGTGCGGAAGACACGGAAGATTCAACTCTTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.462

95.335

0.834
  recA Latilactobacillus sakei subsp. sakei 23K

76.147

95.335

0.726
  recA Streptococcus mitis SK321

67.723

100

0.685
  recA Streptococcus pneumoniae D39

68.222

100

0.682
  recA Streptococcus pneumoniae Rx1

68.222

100

0.682
  recA Streptococcus pneumoniae R6

68.222

100

0.682
  recA Streptococcus pneumoniae TIGR4

68.222

100

0.682
  recA Streptococcus mutans UA159

67.449

99.417

0.671
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.365

97.376

0.656
  recA Neisseria gonorrhoeae strain FA1090

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.798

98.251

0.627
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.254

0.618
  recA Acinetobacter baumannii D1279779

61.012

97.959

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Glaesserella parasuis strain SC1401

63.438

93.294

0.592
  recA Vibrio cholerae strain A1552

64.952

90.671

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.952

90.671

0.589
  recA Acinetobacter baylyi ADP1

61.801

93.878

0.58
  recA Pseudomonas stutzeri DSM 10701

62.187

93.294

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

92.128

0.56

Multiple sequence alignment