Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KZZ19_RS18380 Genome accession   NZ_CP155559
Coordinates   3568351..3569589 (-) Length   412 a.a.
NCBI ID   WP_237979310.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3563351..3574589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS18360 (KZZ19_018355) spoVS 3563770..3564030 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  KZZ19_RS18365 (KZZ19_018360) - 3564180..3564974 (-) 795 WP_001221093.1 TIGR00282 family metallophosphoesterase -
  KZZ19_RS18370 (KZZ19_018365) rny 3565129..3566694 (-) 1566 WP_016086643.1 ribonuclease Y -
  KZZ19_RS18375 (KZZ19_018370) recA 3567175..3568206 (-) 1032 WP_088097465.1 recombinase RecA Machinery gene
  KZZ19_RS18380 (KZZ19_018375) cinA 3568351..3569589 (-) 1239 WP_237979310.1 competence/damage-inducible protein CinA Machinery gene
  KZZ19_RS18385 (KZZ19_018380) pgsA 3569610..3570188 (-) 579 WP_046956497.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KZZ19_RS18390 (KZZ19_018385) - 3570252..3571163 (-) 912 WP_237979312.1 RodZ domain-containing protein -
  KZZ19_RS18395 (KZZ19_018390) - 3571185..3571970 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  KZZ19_RS18400 (KZZ19_018395) - 3572109..3572357 (-) 249 WP_000114455.1 DUF3243 domain-containing protein -
  KZZ19_RS18405 (KZZ19_018400) - 3572433..3573146 (-) 714 WP_237979314.1 SDR family oxidoreductase -
  KZZ19_RS18410 (KZZ19_018405) - 3573250..3574536 (-) 1287 WP_237979316.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45286.54 Da        Isoelectric Point: 5.4891

>NTDB_id=997755 KZZ19_RS18380 WP_237979310.1 3568351..3569589(-) (cinA) [Bacillus thuringiensis strain HSY204]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGIDVYYHTVVGDNNKRLQQAIEVAEERADILIFTGGLGPTKDDLTKET
ISSSLGEELVYDEKALASISEYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAAKLIQHMED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTERAGVSSVFKGGVICYHNDVKQHVLHVPEGV
LSTDGAVSKECARYLAENVKGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDERTVVFSLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=997755 KZZ19_RS18380 WP_237979310.1 3568351..3569589(-) (cinA) [Bacillus thuringiensis strain HSY204]
ATGAATGCTGAAATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTGATGTGTACTACCATACTGTAGTTGGAGATAATAACAAGCGATTACAGCAGGCGATTG
AAGTTGCGGAAGAACGTGCTGACATACTTATTTTCACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTTCTAGTTTGGGTGAAGAGCTTGTGTATGATGAAAAGGCATTAGCATCGATAAGCGAGTACTTTAAGCGTACAGG
TCGCGAGTTTACGGAGAATAACAAAAAGCAGGCGCTCGTTTTAAATGGAGCAACTGTATTTGCGAATGATCACGGCATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCGATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCGCCCCTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCGGCGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGATCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACCGGAGGTCTCTTTGGAAATCAAGTAACAGAAAGAGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGGAGTG
TTATCTACTGATGGTGCAGTTAGTAAAGAATGTGCGCGTTATCTTGCTGAAAATGTTAAGGGCTTATTAAAGGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACAGTGTTCGTTGGATTGGCGA
TGAAGGATGAACGAACTGTAGTCTTTTCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGTTCGGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.805

99.515

0.575
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.946

98.786

0.454
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381

Multiple sequence alignment