Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAVD42_RS20225 Genome accession   NZ_CP154908
Coordinates   3767758..3768798 (+) Length   346 a.a.
NCBI ID   WP_003211102.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3762758..3773798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS20200 (AAVD42_20200) - 3763541..3763798 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AAVD42_RS20205 (AAVD42_20205) - 3763930..3764721 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AAVD42_RS20210 (AAVD42_20210) - 3764745..3765656 (+) 912 WP_345807501.1 helix-turn-helix domain-containing protein -
  AAVD42_RS20215 (AAVD42_20215) pgsA 3765732..3766313 (+) 582 WP_044141864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAVD42_RS20220 (AAVD42_20220) cinA 3766330..3767580 (+) 1251 WP_345807502.1 competence/damage-inducible protein A Machinery gene
  AAVD42_RS20225 (AAVD42_20225) recA 3767758..3768798 (+) 1041 WP_003211102.1 recombinase RecA Machinery gene
  AAVD42_RS20230 (AAVD42_20230) rny 3769105..3770667 (+) 1563 WP_003211958.1 ribonuclease Y -
  AAVD42_RS20235 (AAVD42_20235) - 3770756..3771550 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  AAVD42_RS20240 (AAVD42_20240) spoVS 3771752..3772012 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37716.93 Da        Isoelectric Point: 4.8438

>NTDB_id=995157 AAVD42_RS20225 WP_003211102.1 3767758..3768798(+) (recA) [Bacillus pumilus strain FUA2116]
MSDRQAALDMALKQIEKQFGKGSIMKLGERTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKAAEEEEGQEELEI

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=995157 AAVD42_RS20225 WP_003211102.1 3767758..3768798(+) (recA) [Bacillus pumilus strain FUA2116]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCGAACAGATACACGTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTAGGAATAGGTGGAT
ATCCTCGTGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCCGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCGCTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAATATTGATGAGTTGTTACTTTCTCAGCCTGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGCG
GGGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCG
CACGTTGGTCTACAAGCACGCTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAAAAACCATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAGCAGGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCAGAAGTAGACATTATGTACGGTGAAGGAATCTC
AAAAGAGGGCGAAATCATCGACCTTGGAAGCGAATTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATTCTTCTCATGATTCAAGAACAA
ATTAGAGAGCACTACGGTTTGGATACAAACGGAGTGAAAGCAGCTGAAGAAGAAGAAGGTCAAGAGGAATTGGAAATTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.954

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.931

0.705
  recA Streptococcus mitis SK321

68.437

97.977

0.671
  recA Streptococcus pneumoniae R6

69.394

95.376

0.662
  recA Streptococcus pneumoniae TIGR4

69.394

95.376

0.662
  recA Streptococcus pneumoniae D39

69.394

95.376

0.662
  recA Streptococcus mitis NCTC 12261

69.394

95.376

0.662
  recA Streptococcus pneumoniae Rx1

69.394

95.376

0.662
  recA Streptococcus mutans UA159

68.997

95.087

0.656
  recA Streptococcus pyogenes NZ131

68.293

94.798

0.647
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.376

0.633
  recA Neisseria gonorrhoeae strain FA1090

62.5

99.422

0.621
  recA Neisseria gonorrhoeae MS11

62.5

99.422

0.621
  recA Neisseria gonorrhoeae MS11

62.5

99.422

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.337

94.22

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

98.555

0.613
  recA Acinetobacter baumannii D1279779

61.047

99.422

0.607
  recA Helicobacter pylori 26695

64.615

93.931

0.607
  recA Helicobacter pylori strain NCTC11637

64.615

93.931

0.607
  recA Glaesserella parasuis strain SC1401

60.641

99.133

0.601
  recA Acinetobacter baylyi ADP1

60.882

98.266

0.598
  recA Pseudomonas stutzeri DSM 10701

59.884

99.422

0.595
  recA Vibrio cholerae strain A1552

64.174

92.775

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.775

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.353

0.561

Multiple sequence alignment