Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAVD42_RS20220 Genome accession   NZ_CP154908
Coordinates   3766330..3767580 (+) Length   416 a.a.
NCBI ID   WP_345807502.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3761330..3772580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS20195 (AAVD42_20195) - 3762739..3763467 (+) 729 WP_345807500.1 SDR family oxidoreductase -
  AAVD42_RS20200 (AAVD42_20200) - 3763541..3763798 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AAVD42_RS20205 (AAVD42_20205) - 3763930..3764721 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AAVD42_RS20210 (AAVD42_20210) - 3764745..3765656 (+) 912 WP_345807501.1 helix-turn-helix domain-containing protein -
  AAVD42_RS20215 (AAVD42_20215) pgsA 3765732..3766313 (+) 582 WP_044141864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAVD42_RS20220 (AAVD42_20220) cinA 3766330..3767580 (+) 1251 WP_345807502.1 competence/damage-inducible protein A Machinery gene
  AAVD42_RS20225 (AAVD42_20225) recA 3767758..3768798 (+) 1041 WP_003211102.1 recombinase RecA Machinery gene
  AAVD42_RS20230 (AAVD42_20230) rny 3769105..3770667 (+) 1563 WP_003211958.1 ribonuclease Y -
  AAVD42_RS20235 (AAVD42_20235) - 3770756..3771550 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  AAVD42_RS20240 (AAVD42_20240) spoVS 3771752..3772012 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45686.73 Da        Isoelectric Point: 4.9205

>NTDB_id=995156 AAVD42_RS20220 WP_345807502.1 3766330..3767580(+) (cinA) [Bacillus pumilus strain FUA2116]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLDLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHENENETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=995156 AAVD42_RS20220 WP_345807502.1 3766330..3767580(+) (cinA) [Bacillus pumilus strain FUA2116]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTGTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATCGCGAGTACACTTGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGAATGGCCCCGGGTATGTTTATTCAAGAAGACGATACGTTTTATATGCTACTTCCTGGACCACCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGCCGCTGATATCTGAGAAACTGGACTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTTTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGAATGAAAATGAAACGGAGCGTCTGTTA
AAAGAGACGGAAGCGAAAATTTTAGCGCGTGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCCTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGGATGTTTTCTGAATGGCTGA
CAGACCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGTGAGGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCGGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGTTTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.494

99.76

0.733
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment