Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QUD34_RS01655 Genome accession   NZ_AP027079
Coordinates   384526..385584 (-) Length   352 a.a.
NCBI ID   WP_286354850.1    Uniprot ID   -
Organism   Geothrix oryzae strain Red222     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379526..390584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD34_RS01635 (GETHOR_03230) moaA 379790..380794 (-) 1005 WP_286354846.1 GTP 3',8-cyclase MoaA -
  QUD34_RS01640 (GETHOR_03240) - 380899..382098 (+) 1200 WP_286354847.1 hypothetical protein -
  QUD34_RS01645 (GETHOR_03250) - 382095..383474 (+) 1380 WP_286354848.1 tetratricopeptide repeat-containing serine protease family protein -
  QUD34_RS01650 (GETHOR_03260) - 383422..384378 (-) 957 WP_286354849.1 isopenicillin N synthase family oxygenase -
  QUD34_RS01655 (GETHOR_03270) recA 384526..385584 (-) 1059 WP_286354850.1 recombinase RecA Machinery gene
  QUD34_RS01660 (GETHOR_03280) - 385686..388139 (+) 2454 WP_286354851.1 ATP-binding protein -
  QUD34_RS01665 (GETHOR_03290) - 388141..389325 (+) 1185 WP_286354852.1 hypothetical protein -
  QUD34_RS01670 (GETHOR_03300) - 389343..390476 (-) 1134 WP_286354853.1 glycosyltransferase family A protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37638.21 Da        Isoelectric Point: 5.8198

>NTDB_id=99468 QUD34_RS01655 WP_286354850.1 384526..385584(-) (recA) [Geothrix oryzae strain Red222]
MAAAEQDERLKALTRTLADIDRAFGKGSVMKLGDRMNSAEGIEVISTGSIALDSALGVGGVPKGRVVEVYGPEASGKTTL
ALHMVAQAQKKGGLAAYIDAEHALDPEYAQKLGVDVANLFISQPDSGEQALEICDQLVRSGALDIIVVDSVAALVPKAEI
DGEMGDSHVGLQARLMSQALRKMTGTISKTHTCVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRSIQSIKGNT
NDPLVAAKDEDSSVIGKKTKVKVVKNKVAPPLKVATFDIMYGEGISRTGELVELGTQLEIIQKSGSWYSYKDSRLGQGAE
NVKKLFMDNPELADEVETLIRERLGMKATVEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=99468 QUD34_RS01655 WP_286354850.1 384526..385584(-) (recA) [Geothrix oryzae strain Red222]
ATGGCCGCGGCCGAGCAAGATGAACGCCTGAAAGCCCTGACGCGCACCCTGGCCGACATCGACCGGGCCTTCGGCAAGGG
CTCGGTCATGAAGCTCGGCGACCGGATGAACAGCGCCGAGGGCATCGAGGTCATCAGCACCGGTTCCATCGCCCTGGACT
CGGCGCTGGGCGTGGGCGGCGTGCCCAAGGGCCGCGTCGTCGAGGTCTACGGCCCGGAAGCCAGCGGCAAGACCACCCTG
GCCCTGCACATGGTGGCCCAGGCCCAGAAGAAGGGCGGCCTGGCCGCCTACATCGACGCCGAGCACGCCCTCGATCCTGA
ATACGCCCAGAAGCTGGGCGTGGATGTGGCCAACCTCTTCATTTCCCAGCCCGACAGCGGCGAGCAGGCCCTGGAGATCT
GCGACCAGCTGGTGCGCAGCGGGGCCCTGGACATCATCGTGGTGGATTCCGTGGCCGCCCTGGTGCCCAAGGCCGAAATC
GACGGCGAGATGGGCGACAGCCATGTGGGCCTCCAGGCCCGCCTCATGAGCCAGGCCCTCCGCAAGATGACCGGTACCAT
CAGCAAGACCCACACCTGCGTGGTCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGCAATCCCGAGACCA
CCACCGGCGGCAACGCGCTCAAGTTCTACGCCTCCGTGCGCCTCGATGTCCGCAGCATCCAGAGCATCAAGGGCAACACC
AACGATCCCCTGGTGGCCGCCAAGGACGAGGATTCCTCCGTCATCGGCAAGAAGACCAAGGTGAAGGTCGTCAAGAACAA
GGTCGCCCCGCCCCTCAAGGTCGCCACCTTCGACATCATGTATGGCGAGGGCATCAGCCGCACCGGCGAGCTGGTGGAGC
TGGGCACCCAGCTGGAGATCATCCAGAAGAGCGGCTCCTGGTACAGCTACAAGGACAGCCGCCTGGGCCAGGGGGCCGAG
AATGTGAAGAAGCTCTTCATGGACAACCCCGAACTGGCGGACGAGGTCGAGACCCTCATCCGCGAGCGCCTCGGCATGAA
GGCCACCGTGGAAGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.327

97.159

0.625
  recA Neisseria gonorrhoeae MS11

64.179

95.17

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.179

95.17

0.611
  recA Neisseria gonorrhoeae MS11

64.179

95.17

0.611
  recA Streptococcus pyogenes NZ131

62.242

96.307

0.599
  recA Streptococcus mutans UA159

61.765

96.591

0.597
  recA Streptococcus mitis NCTC 12261

61.947

96.307

0.597
  recA Acinetobacter baylyi ADP1

61.224

97.443

0.597
  recA Glaesserella parasuis strain SC1401

61.471

96.591

0.594
  recA Streptococcus mitis SK321

61.652

96.307

0.594
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.898

0.594
  recA Streptococcus pneumoniae Rx1

61.357

96.307

0.591
  recA Streptococcus pneumoniae R6

61.357

96.307

0.591
  recA Streptococcus pneumoniae TIGR4

61.357

96.307

0.591
  recA Streptococcus pneumoniae D39

61.357

96.307

0.591
  recA Acinetobacter baumannii D1279779

61.243

96.023

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

61.062

96.307

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.42

98.011

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60.117

96.875

0.582
  recA Pseudomonas stutzeri DSM 10701

60.059

96.023

0.577
  recA Helicobacter pylori 26695

59.118

96.591

0.571
  recA Helicobacter pylori strain NCTC11637

58.824

96.591

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.997

96.307

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.58

96.023

0.563
  recA Vibrio cholerae strain A1552

58.58

96.023

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.268

97.443

0.548

Multiple sequence alignment