Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMG27_RS12460 Genome accession   NZ_AP027058
Coordinates   2600011..2601135 (-) Length   374 a.a.
NCBI ID   WP_281811793.1    Uniprot ID   -
Organism   Limnohabitans sp. MORI2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2595011..2606135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG27_RS12435 (LMORI2_24240) pilA 2595667..2596179 (-) 513 WP_281811785.1 pilin Machinery gene
  QMG27_RS12440 (LMORI2_24250) sucD 2596309..2597205 (-) 897 WP_281811787.1 succinate--CoA ligase subunit alpha -
  QMG27_RS12445 (LMORI2_24260) sucC 2597215..2598375 (-) 1161 WP_281811789.1 ADP-forming succinate--CoA ligase subunit beta -
  QMG27_RS12450 (LMORI2_24270) argC 2598547..2599464 (+) 918 WP_281811791.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  QMG27_RS12455 (LMORI2_24280) recX 2599484..2599963 (-) 480 WP_281814670.1 recombination regulator RecX -
  QMG27_RS12460 (LMORI2_24290) recA 2600011..2601135 (-) 1125 WP_281811793.1 recombinase RecA Machinery gene
  QMG27_RS12465 (LMORI2_24300) - 2601265..2601774 (+) 510 WP_281811795.1 MarR family winged helix-turn-helix transcriptional regulator -
  QMG27_RS12470 (LMORI2_24310) - 2601808..2602482 (+) 675 WP_281811797.1 response regulator transcription factor -
  QMG27_RS12475 (LMORI2_24320) - 2602501..2603943 (+) 1443 WP_281811800.1 sensor histidine kinase -
  QMG27_RS12480 (LMORI2_24330) fur 2603993..2604430 (+) 438 WP_281811802.1 ferric iron uptake transcriptional regulator -
  QMG27_RS12485 (LMORI2_24340) - 2604437..2605597 (-) 1161 WP_281814672.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39726.49 Da        Isoelectric Point: 5.0991

>NTDB_id=99453 QMG27_RS12460 WP_281811793.1 2600011..2601135(-) (recA) [Limnohabitans sp. MORI2]
MSTKPAVDSEKAKALQAALAQIEKQFGKGTIMRLGEGEVVDDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT
LTLQVIAEMQKQGGTCAFVDAEHALDSQYAQKLGVNLQDLLISQPDTGEQALEVVDSLVRSGAVDLVVVDSVAALTPKAE
LEGDMGDSLPGLQARLMSQALRKLTASIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKRG
DEAVGNETKVKVVKNKVSPPFKTAEFDILFGEGISRQGEIIDMGVNAKVIEKSGAWYAYNGEKIGQGRDNAREFLRENEA
LAFEIENKVRESLGIPLLAGGPEVPAAKEEKAPKASKAAKEAKAAEVDADGVVL

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=99453 QMG27_RS12460 WP_281811793.1 2600011..2601135(-) (recA) [Limnohabitans sp. MORI2]
ATGAGCACCAAACCCGCCGTCGATAGTGAAAAAGCCAAAGCCCTGCAAGCCGCGCTGGCCCAAATTGAAAAGCAATTTGG
CAAAGGCACCATCATGCGTTTGGGCGAGGGTGAGGTGGTGGACGACATCCAAGTCGTGTCCACTGGCTCCTTGGGTCTGG
ACATCGCCTTGGGCGTTGGCGGCCTGCCCCGTGGCCGCGTGATCGAAATTTACGGCCCTGAATCGTCAGGCAAAACCACC
CTCACCTTGCAAGTGATTGCCGAGATGCAAAAGCAAGGCGGCACTTGCGCGTTTGTGGACGCTGAGCATGCACTGGATTC
GCAATACGCTCAAAAGCTCGGTGTGAACTTGCAAGACTTGCTCATCAGCCAGCCCGACACCGGCGAACAAGCGCTTGAAG
TGGTGGACAGCCTCGTGCGCTCTGGCGCGGTGGACTTGGTGGTGGTCGACTCCGTGGCCGCCCTCACCCCTAAGGCCGAA
CTCGAAGGCGACATGGGCGATTCATTGCCCGGCCTGCAAGCCCGCTTGATGAGCCAAGCGCTACGGAAATTGACGGCCTC
CATCAAGAAGACCAATTGCACGGTGATCTTCATCAACCAAATCCGCATGAAGATTGGCGTGATGTTTGGCTCGCCCGAAA
CTACAACGGGTGGTAACGCGCTCAAGTTCTATGCCTCGGTGCGTTTGGACATTCGCCGCACCGGCACCATCAAACGTGGC
GACGAAGCCGTGGGTAACGAGACCAAAGTCAAGGTGGTGAAGAACAAAGTGTCGCCCCCCTTCAAGACGGCTGAGTTCGA
CATCTTGTTTGGTGAAGGTATCAGCCGCCAAGGCGAAATCATTGACATGGGTGTGAACGCCAAAGTCATTGAAAAGTCGG
GCGCTTGGTATGCCTACAACGGCGAAAAAATTGGCCAAGGTCGGGACAATGCCCGTGAGTTCTTGCGCGAAAACGAAGCG
CTCGCGTTTGAGATTGAAAACAAAGTGCGCGAATCTTTGGGCATTCCTTTGTTGGCCGGTGGCCCCGAAGTCCCCGCTGC
CAAAGAAGAAAAAGCACCCAAGGCCAGCAAGGCTGCGAAAGAAGCGAAAGCCGCCGAAGTTGACGCTGACGGCGTGGTGC
TCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.847

83.957

0.687
  recA Pseudomonas stutzeri DSM 10701

71.56

87.433

0.626
  recA Neisseria gonorrhoeae MS11

70.427

87.701

0.618
  recA Neisseria gonorrhoeae strain FA1090

70.427

87.701

0.618
  recA Neisseria gonorrhoeae MS11

70.427

87.701

0.618
  recA Acinetobacter baumannii D1279779

70.336

87.433

0.615
  recA Glaesserella parasuis strain SC1401

70.37

86.631

0.61
  recA Acinetobacter baylyi ADP1

69.419

87.433

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.485

88.235

0.604
  recA Vibrio cholerae strain A1552

68.485

88.235

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.469

90.107

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.385

90.374

0.591
  recA Helicobacter pylori strain NCTC11637

65.152

88.235

0.575
  recA Helicobacter pylori 26695

65.152

88.235

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.433

0.567
  recA Streptococcus mitis NCTC 12261

58.263

95.455

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

87.166

0.545
  recA Streptococcus pyogenes NZ131

62.006

87.968

0.545
  recA Streptococcus pneumoniae Rx1

61.329

88.503

0.543
  recA Streptococcus pneumoniae D39

61.329

88.503

0.543
  recA Streptococcus pneumoniae R6

61.329

88.503

0.543
  recA Streptococcus pneumoniae TIGR4

61.329

88.503

0.543
  recA Streptococcus mitis SK321

61.027

88.503

0.54
  recA Streptococcus mutans UA159

60.909

88.235

0.537
  recA Lactococcus lactis subsp. cremoris KW2

60.423

88.503

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.061

87.701

0.527

Multiple sequence alignment