Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QMG27_RS12435 Genome accession   NZ_AP027058
Coordinates   2595667..2596179 (-) Length   170 a.a.
NCBI ID   WP_281811785.1    Uniprot ID   -
Organism   Limnohabitans sp. MORI2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590667..2601179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG27_RS12415 (LMORI2_24200) - 2590973..2592547 (-) 1575 WP_281811777.1 M48 family metalloprotease -
  QMG27_RS12420 (LMORI2_24210) moaC 2592615..2593091 (+) 477 WP_281811779.1 cyclic pyranopterin monophosphate synthase MoaC -
  QMG27_RS12425 (LMORI2_24220) - 2593128..2593883 (+) 756 WP_281811781.1 glycosyltransferase family 2 protein -
  QMG27_RS12430 (LMORI2_24230) - 2593896..2595581 (-) 1686 WP_281811783.1 O-antigen ligase family protein -
  QMG27_RS12435 (LMORI2_24240) pilA 2595667..2596179 (-) 513 WP_281811785.1 pilin Machinery gene
  QMG27_RS12440 (LMORI2_24250) sucD 2596309..2597205 (-) 897 WP_281811787.1 succinate--CoA ligase subunit alpha -
  QMG27_RS12445 (LMORI2_24260) sucC 2597215..2598375 (-) 1161 WP_281811789.1 ADP-forming succinate--CoA ligase subunit beta -
  QMG27_RS12450 (LMORI2_24270) argC 2598547..2599464 (+) 918 WP_281811791.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  QMG27_RS12455 (LMORI2_24280) recX 2599484..2599963 (-) 480 WP_281814670.1 recombination regulator RecX -
  QMG27_RS12460 (LMORI2_24290) recA 2600011..2601135 (-) 1125 WP_281811793.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17273.92 Da        Isoelectric Point: 8.4590

>NTDB_id=99452 QMG27_RS12435 WP_281811785.1 2595667..2596179(-) (pilA) [Limnohabitans sp. MORI2]
MKHTLQRGFTLIELMIVVAIIGVLASVALPAYQDYMVRARVSEGLGLAAAAKTNVLDVANSGNVATAANGYKTGYVFGGA
TKNISSIDIAASTGVITITTTAAAGGGSLLLVPFTKSGTTDSALPAPTATSVTIEGTVQWKCMAKGADTFVGVSVPTDAL
DKKYVPSDCK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=99452 QMG27_RS12435 WP_281811785.1 2595667..2596179(-) (pilA) [Limnohabitans sp. MORI2]
ATGAAACACACTTTGCAACGCGGCTTTACGCTGATTGAACTCATGATCGTGGTGGCCATCATTGGCGTGCTGGCTTCGGT
GGCTTTGCCAGCCTACCAAGACTACATGGTGCGCGCCCGCGTGAGTGAAGGCTTAGGCCTCGCTGCTGCTGCCAAAACCA
ATGTGCTGGATGTGGCCAACAGCGGCAATGTGGCGACGGCCGCCAATGGTTACAAAACAGGCTACGTTTTTGGTGGTGCG
ACCAAGAACATCAGCAGCATTGACATTGCGGCCAGCACGGGTGTGATCACCATCACGACCACGGCGGCCGCGGGTGGCGG
CAGTTTGCTGTTGGTTCCATTCACGAAGAGTGGCACAACCGATTCAGCGCTGCCAGCGCCAACAGCCACCAGCGTGACGA
TTGAAGGCACGGTGCAGTGGAAGTGCATGGCCAAAGGCGCAGATACTTTTGTAGGCGTCTCGGTGCCCACTGATGCGCTC
GACAAAAAGTATGTGCCGAGTGACTGCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-170)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

46.629

100

0.488
  pilA2 Legionella pneumophila strain ERS1305867

45.455

97.059

0.441
  pilA2 Legionella pneumophila str. Paris

45.455

97.059

0.441
  comP Acinetobacter baylyi ADP1

40.719

98.235

0.4
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.846

100

0.388

Multiple sequence alignment