Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAG895_RS02855 Genome accession   NZ_CP154859
Coordinates   648952..649989 (-) Length   345 a.a.
NCBI ID   WP_345794056.1    Uniprot ID   -
Organism   Thauera sp. JM12B12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 643952..654989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG895_RS02825 (AAG895_02825) hprK 644415..645362 (-) 948 WP_345794050.1 HPr(Ser) kinase/phosphatase -
  AAG895_RS02830 (AAG895_02830) ptsN 645331..645816 (-) 486 WP_345794051.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AAG895_RS02835 (AAG895_02835) raiA 645956..646279 (-) 324 WP_345794052.1 ribosome-associated translation inhibitor RaiA -
  AAG895_RS02840 (AAG895_02840) rpoN/rpoN1 646297..647754 (-) 1458 WP_345794053.1 RNA polymerase factor sigma-54 Machinery gene
  AAG895_RS02845 (AAG895_02845) lptB 647777..648499 (-) 723 WP_345794054.1 LPS export ABC transporter ATP-binding protein -
  AAG895_RS02850 (AAG895_02850) recX 648486..648935 (-) 450 WP_345794055.1 recombination regulator RecX -
  AAG895_RS02855 (AAG895_02855) recA 648952..649989 (-) 1038 WP_345794056.1 recombinase RecA Machinery gene
  AAG895_RS02860 (AAG895_02860) - 650185..650682 (-) 498 WP_345794057.1 nicotinamide-nucleotide amidohydrolase family protein -
  AAG895_RS02865 (AAG895_02865) - 650687..651169 (-) 483 WP_345794058.1 phosphatidylglycerophosphatase A -
  AAG895_RS02870 (AAG895_02870) thiL 651235..652194 (-) 960 WP_345794059.1 thiamine-phosphate kinase -
  AAG895_RS02875 (AAG895_02875) - 652530..653063 (-) 534 WP_345794060.1 SCP2 sterol-binding domain-containing protein -
  AAG895_RS02880 (AAG895_02880) - 653289..654200 (-) 912 WP_345794061.1 U32 family peptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36929.33 Da        Isoelectric Point: 5.1695

>NTDB_id=994146 AAG895_RS02855 WP_345794056.1 648952..649989(-) (recA) [Thauera sp. JM12B12]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKMGGTAAFIDAEHALDVGYAEKLGVDIEDLLISQPDTGEQALEIADMLVRSGGVDIVVVDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGS
ETRVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEHKIVDKSGAWYAYQGDKIGQGKDNSREFLRNNPALAREIE
NKVRVAVGLPEMPPATPAAPAPAEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=994146 AAG895_RS02855 WP_345794056.1 648952..649989(-) (recA) [Thauera sp. JM12B12]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCTGCGCTCTCGCAGATCGAAAAGCAGTTCGGCAAGGGTTCGATCATGCG
CATGGGCGACGGCAACGTCGAGCGCGACATCCAGACCGTCTCCACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCCTCG
GCGGCCTGCCGCGCGGTCGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACGCTCACCCTGCAGGTCATC
GCCGAGATGCAGAAGATGGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTACGCCGAAAAGCT
CGGGGTGGACATCGAGGACCTGCTGATCTCGCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGGGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTCCCCGGCCTGCAGGCGCGCCTGATGTCGCAGGCACTGCGCAAGCTCACCGCGAACATCAAGCGCACCAACAC
GCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACGACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAGGTGGTCGGCTCC
GAGACCCGCGTCAAGGTGGTCAAGAACAAGGTGTCGCCGCCGTTCAAGGAGGCGCACTTCGACATCCTCTACGGCGAGGG
CATCTCGCGCGAGGGCGAGATCATCGACCTCGGCGTCGAGCACAAGATCGTCGACAAGTCCGGAGCCTGGTACGCCTACC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCAACAATCCGGCACTGGCGCGCGAGATCGAG
AACAAGGTCCGCGTTGCCGTCGGCCTGCCCGAAATGCCCCCGGCCACGCCGGCTGCGCCGGCGCCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.734

93.623

0.765
  recA Pseudomonas stutzeri DSM 10701

72.254

100

0.725
  recA Acinetobacter baylyi ADP1

73.457

93.913

0.69
  recA Vibrio cholerae strain A1552

71.903

95.942

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.903

95.942

0.69
  recA Acinetobacter baumannii D1279779

73.148

93.913

0.687
  recA Neisseria gonorrhoeae MS11

72.036

95.362

0.687
  recA Neisseria gonorrhoeae MS11

72.036

95.362

0.687
  recA Neisseria gonorrhoeae strain FA1090

72.036

95.362

0.687
  recA Glaesserella parasuis strain SC1401

70.186

93.333

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

95.072

0.641
  recA Helicobacter pylori 26695

63.93

98.841

0.632
  recA Helicobacter pylori strain NCTC11637

63.93

98.841

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.865

96.522

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.362

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

62.538

95.942

0.6
  recA Streptococcus mutans UA159

60.36

96.522

0.583
  recA Streptococcus mitis SK321

60.79

95.362

0.58
  recA Streptococcus mitis NCTC 12261

60.79

95.362

0.58
  recA Streptococcus pneumoniae Rx1

60.486

95.362

0.577
  recA Streptococcus pneumoniae D39

60.486

95.362

0.577
  recA Streptococcus pneumoniae R6

60.486

95.362

0.577
  recA Streptococcus pneumoniae TIGR4

60.486

95.362

0.577
  recA Streptococcus pyogenes NZ131

60

95.652

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.783

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

93.913

0.551

Multiple sequence alignment