Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYE63_RS09155 Genome accession   NZ_CP152053
Coordinates   1839402..1840448 (+) Length   348 a.a.
NCBI ID   WP_207437422.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1834402..1845448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS09130 (NYE63_09125) - 1834841..1835098 (+) 258 WP_342604876.1 DUF3243 domain-containing protein -
  NYE63_RS09135 (NYE63_09130) - 1835340..1836131 (+) 792 WP_063231810.1 DUF3388 domain-containing protein -
  NYE63_RS09140 (NYE63_09135) - 1836140..1837048 (+) 909 WP_342604877.1 RodZ domain-containing protein -
  NYE63_RS09145 (NYE63_09140) pgsA 1837215..1837799 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYE63_RS09150 (NYE63_09145) cinA 1837822..1839054 (+) 1233 WP_307262640.1 competence/damage-inducible protein A Machinery gene
  NYE63_RS09155 (NYE63_09150) recA 1839402..1840448 (+) 1047 WP_207437422.1 recombinase RecA Machinery gene
  NYE63_RS09160 (NYE63_09155) rny 1840802..1842361 (+) 1560 WP_063231807.1 ribonuclease Y -
  NYE63_RS09165 (NYE63_09160) - 1842514..1843311 (+) 798 WP_342604878.1 TIGR00282 family metallophosphoesterase -
  NYE63_RS09170 (NYE63_09165) spoVS 1843486..1843746 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  NYE63_RS09175 (NYE63_09170) - 1843881..1844816 (+) 936 WP_342604879.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38031.07 Da        Isoelectric Point: 4.7334

>NTDB_id=987012 NYE63_RS09155 WP_207437422.1 1839402..1840448(+) (recA) [Peribacillus sp. FSL E2-0159]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGADLDIVLKSGSWYSYNEERVGQGRENAKLFLKENQDIAQEISQK
IRDHYNLDGEHELPPEENEPEEHFELLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=987012 NYE63_RS09155 WP_207437422.1 1839402..1840448(+) (recA) [Peribacillus sp. FSL E2-0159]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCCATTATGAAACT
TGGGGAACAGTCTGATCGTAGGATTTCAACGATTTCAAGCGGTTCTTTAGCATTGGACGTAGCATTGGGAGTGGGCGGAT
ATCCAAGAGGCCGGGTCATTGAGATATATGGACCTGAAAGCTCCGGTAAAACGACTGTTGCTTTACATGCTATTGCAGAA
GTACAAAAGACTGGCGGCACGGCTGCATTCATTGATGCAGAGCATGCCTTAGATCCAGCATATTCAGAAAAACTTGGTGT
GAATATCGATGAGTTACTGCTTTCACAGCCTGATACGGGTGAACAAGCCTTAGAGATCGCTGAAGCGTTAGTTCGAAGTG
GAGCGGTGGATATAATTGTCATTGACTCGGTGGCAGCACTTGTTCCTAAAGCTGAAATCGAAGGCGAAATGGGAGATTCC
CATATGGGTCTTCAAGCCCGGATGATGTCTCAGGCACTAAGAAAACTATCAGGTGCCATTAATAAATCAAATACCATTGC
CATTTTCATTAACCAAGTCCGTGAAAAAATCGGTGTTATGTTTGGGAATCCTGAAACGACTCCGGGAGGCCGGGCATTGA
AGTTCTATTCAACTGTTCGTCTGGAAGTGCGTCGTGCGGAACAACTAAAACAAGGAAATGAAATTGTCGGTAATAAAACC
AAAATCAAAGTTGTAAAAAACAAGGTTGCTCCACCATTCCGTCAAGCGGAAGTTGACATCATGTATGGTCAAGGGATTTC
CCAGGAAGGTGAAATCATCGATATGGGTGCAGATCTTGATATCGTCCTTAAAAGCGGCTCGTGGTATTCATACAATGAAG
AGCGTGTCGGACAAGGCCGCGAAAATGCGAAGCTGTTCTTGAAAGAAAATCAGGATATCGCTCAGGAAATTTCTCAGAAA
ATCAGAGATCACTATAATCTCGATGGCGAGCATGAATTACCACCAGAAGAAAATGAACCAGAAGAGCATTTTGAATTGCT
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

94.253

0.807
  recA Latilactobacillus sakei subsp. sakei 23K

72.861

97.414

0.71
  recA Streptococcus pneumoniae R6

67.463

96.264

0.649
  recA Streptococcus mitis NCTC 12261

67.463

96.264

0.649
  recA Streptococcus pneumoniae Rx1

67.463

96.264

0.649
  recA Streptococcus pneumoniae D39

67.463

96.264

0.649
  recA Streptococcus pneumoniae TIGR4

67.463

96.264

0.649
  recA Streptococcus mitis SK321

65.889

98.563

0.649
  recA Streptococcus mutans UA159

67.477

94.54

0.638
  recA Streptococcus pyogenes NZ131

67.278

93.966

0.632
  recA Lactococcus lactis subsp. cremoris KW2

64.881

96.552

0.626
  recA Ralstonia pseudosolanacearum GMI1000

68.69

89.943

0.618
  recA Vibrio cholerae strain A1552

66.355

92.241

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.241

0.612
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.241

0.609
  recA Acinetobacter baumannii D1279779

61.047

98.851

0.603
  recA Acinetobacter baylyi ADP1

60.405

99.425

0.601
  recA Helicobacter pylori 26695

60.756

98.851

0.601
  recA Helicobacter pylori strain NCTC11637

60.756

98.851

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.253

0.598
  recA Pseudomonas stutzeri DSM 10701

64.062

91.954

0.589
  recA Glaesserella parasuis strain SC1401

63.75

91.954

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.966

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

91.954

0.572

Multiple sequence alignment