Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYE63_RS09150 Genome accession   NZ_CP152053
Coordinates   1837822..1839054 (+) Length   410 a.a.
NCBI ID   WP_307262640.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1832822..1844054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS09125 (NYE63_09120) - 1834036..1834761 (+) 726 WP_307262650.1 SDR family oxidoreductase -
  NYE63_RS09130 (NYE63_09125) - 1834841..1835098 (+) 258 WP_342604876.1 DUF3243 domain-containing protein -
  NYE63_RS09135 (NYE63_09130) - 1835340..1836131 (+) 792 WP_063231810.1 DUF3388 domain-containing protein -
  NYE63_RS09140 (NYE63_09135) - 1836140..1837048 (+) 909 WP_342604877.1 RodZ domain-containing protein -
  NYE63_RS09145 (NYE63_09140) pgsA 1837215..1837799 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYE63_RS09150 (NYE63_09145) cinA 1837822..1839054 (+) 1233 WP_307262640.1 competence/damage-inducible protein A Machinery gene
  NYE63_RS09155 (NYE63_09150) recA 1839402..1840448 (+) 1047 WP_207437422.1 recombinase RecA Machinery gene
  NYE63_RS09160 (NYE63_09155) rny 1840802..1842361 (+) 1560 WP_063231807.1 ribonuclease Y -
  NYE63_RS09165 (NYE63_09160) - 1842514..1843311 (+) 798 WP_342604878.1 TIGR00282 family metallophosphoesterase -
  NYE63_RS09170 (NYE63_09165) spoVS 1843486..1843746 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44957.20 Da        Isoelectric Point: 5.0452

>NTDB_id=987011 NYE63_RS09150 WP_307262640.1 1837822..1839054(+) (cinA) [Peribacillus sp. FSL E2-0159]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNVLGVSDD
TISEHGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=987011 NYE63_RS09150 WP_307262640.1 1837822..1839054(+) (cinA) [Peribacillus sp. FSL E2-0159]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTCTTTACCGGTGGACTTGGTCCTACCAAAGATGATTTAACGAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAATAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CACCGGGAATGGTTTTGTCCAAATCTGGGATTACATATATGCTTCTACCTGGTCCGCCAAGTGAAATGGAGCCAATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCTGAACTTGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCTCCGCTTGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCTTCTAAAGAAAAATGCGAAGAGCTTATTTTAGAAGCGGAA
AAAGAAATTCTTAGCAGAGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GTGCCGGTAAAGTATTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCGAATGTCCTCGGCGTCAGTGATGAT
ACGATATCTGAGCATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGCAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGGACAGTATTTATTGGCATTT
CCTATCGGGATGGGAACACTCATTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCACTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.578

99.512

0.583
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.466
  cinA Streptococcus pneumoniae Rx1

45

100

0.461
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae R6

45

100

0.461
  cinA Streptococcus pneumoniae D39

44.762

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.564

98.537

0.429
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38

Multiple sequence alignment