Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHB48_RS06775 Genome accession   NZ_CP152052
Coordinates   1461882..1462943 (+) Length   353 a.a.
NCBI ID   WP_342600745.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1456882..1467943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS06750 (MHB48_06750) - 1457269..1458000 (+) 732 WP_342600741.1 SDR family oxidoreductase -
  MHB48_RS06755 (MHB48_06755) - 1458124..1458930 (+) 807 WP_342600742.1 DUF3388 domain-containing protein -
  MHB48_RS06760 (MHB48_06760) - 1458947..1459798 (+) 852 WP_342600743.1 RodZ domain-containing protein -
  MHB48_RS06765 (MHB48_06765) pgsA 1459855..1460433 (+) 579 WP_340925146.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB48_RS06770 (MHB48_06770) cinA 1460449..1461705 (+) 1257 WP_342600744.1 competence/damage-inducible protein A Machinery gene
  MHB48_RS06775 (MHB48_06775) recA 1461882..1462943 (+) 1062 WP_342600745.1 recombinase RecA Machinery gene
  MHB48_RS06780 (MHB48_06780) rny 1463622..1465181 (+) 1560 WP_342600746.1 ribonuclease Y -
  MHB48_RS06785 (MHB48_06785) - 1465309..1466106 (+) 798 WP_342600747.1 TIGR00282 family metallophosphoesterase -
  MHB48_RS06790 (MHB48_06790) - 1466192..1466458 (+) 267 WP_340919285.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38159.28 Da        Isoelectric Point: 4.6370

>NTDB_id=986971 MHB48_RS06775 WP_342600745.1 1461882..1462943(+) (recA) [Psychrobacillus sp. FSL H8-0483]
MSNDRKAALEMALKQIEKQFGKGSVMRLGEKTDLQISTSSSGSLALDSALGIGGYPRGRIIEVYGPESSGKTTVALHAIA
EIQKTGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEILVIDSVAALVPKAEIEGEMGD
SHIGLQARLMSQALRKLSGVINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIVGNK
TKIKIVKNKVAPPFKTAEVDIMYGEGISQEGEIVDIGSDLDIIQKSGSWYAYNEERIGQGRENAKQFLKENPNTKNEIAS
KIRESLGMTGSSVTIEAPEEEEDEEFDLLLDEN

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=986971 MHB48_RS06775 WP_342600745.1 1461882..1462943(+) (recA) [Psychrobacillus sp. FSL H8-0483]
TTGAGCAATGATCGTAAAGCGGCTTTAGAAATGGCTTTAAAACAAATAGAGAAACAATTTGGTAAGGGTTCGGTTATGAG
GCTTGGAGAAAAAACTGATCTTCAAATTTCTACTTCTTCTAGTGGTTCATTAGCACTTGATTCAGCACTAGGGATAGGTG
GATATCCAAGAGGCCGTATTATTGAGGTATATGGACCAGAAAGCTCTGGTAAAACTACAGTAGCACTACATGCAATTGCA
GAAATCCAAAAAACTGGCGGTCAAGCCGCTTTTATTGACGCAGAGCATGCGTTGGACCCAGTTTATGCTCAAAAACTAGG
GGTTAATATTGACGAATTACTTTTATCACAACCAGATACAGGGGAGCAAGCGCTTGAAATTGCAGAGGCTTTAGTACGAA
GTGGCGCAGTTGAAATTTTAGTAATTGACTCAGTAGCAGCTCTAGTACCGAAAGCGGAAATTGAAGGAGAAATGGGAGAT
TCACATATTGGTCTTCAAGCACGTTTAATGTCACAAGCATTACGTAAGCTTTCAGGTGTTATTAACAAATCTAATACAAT
TGCTATTTTTATAAATCAAATTCGAGAAAAAGTTGGAGTAATGTTTGGGAACCCTGAAGTAACACCAGGTGGACGCGCGC
TTAAATTTTATAGTTCCGTTCGTTTAGAAGTAAGACGTGCAGAGGCTATTAAACAAGGGACAGATATCGTTGGTAACAAA
ACGAAAATCAAAATAGTTAAAAATAAAGTAGCACCTCCATTTAAAACAGCAGAAGTTGATATTATGTATGGAGAAGGAAT
TTCTCAAGAAGGAGAAATTGTTGATATAGGATCAGACCTTGATATAATACAAAAAAGTGGTTCTTGGTATGCGTATAATG
AAGAACGCATTGGTCAAGGTAGAGAAAATGCAAAGCAATTCCTAAAAGAAAATCCAAATACTAAAAACGAAATTGCGTCT
AAAATTCGTGAATCGCTCGGTATGACAGGTAGCTCGGTTACAATAGAAGCTCCTGAAGAGGAAGAAGACGAAGAATTCGA
CTTATTATTGGACGAAAATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.434

94.051

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

71.268

100

0.717
  recA Streptococcus mutans UA159

66.384

100

0.666
  recA Streptococcus pyogenes NZ131

66.197

100

0.666
  recA Streptococcus mitis SK321

66.957

97.734

0.654
  recA Streptococcus pneumoniae Rx1

66.763

98.017

0.654
  recA Streptococcus pneumoniae D39

66.763

98.017

0.654
  recA Streptococcus pneumoniae R6

66.763

98.017

0.654
  recA Streptococcus pneumoniae TIGR4

66.763

98.017

0.654
  recA Streptococcus mitis NCTC 12261

66.667

96.884

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.334

0.629
  recA Neisseria gonorrhoeae MS11

62.248

98.3

0.612
  recA Neisseria gonorrhoeae MS11

62.248

98.3

0.612
  recA Neisseria gonorrhoeae strain FA1090

62.248

98.3

0.612
  recA Acinetobacter baumannii D1279779

61.538

99.433

0.612
  recA Acinetobacter baylyi ADP1

61.318

98.867

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.329

92.918

0.598
  recA Pseudomonas stutzeri DSM 10701

60.345

98.584

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.405

98.017

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

92.351

0.589
  recA Vibrio cholerae strain A1552

63.804

92.351

0.589
  recA Glaesserella parasuis strain SC1401

60.465

97.45

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

93.768

0.581
  recA Helicobacter pylori strain NCTC11637

62.195

92.918

0.578
  recA Helicobacter pylori 26695

61.89

92.918

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

92.351

0.558

Multiple sequence alignment