Detailed information    

insolico Bioinformatically predicted

Overview


Name   vicX   Type   Regulator
Locus tag   ACOCJA_RS10200 Genome accession   NZ_CP184565
Coordinates   2043745..2044545 (-) Length   266 a.a.
NCBI ID   WP_001807805.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBTW2018043     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2038745..2049545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJA_RS10185 (ACOCJA_10185) - 2039801..2040106 (-) 306 WP_000677988.1 hypothetical protein -
  ACOCJA_RS10190 (ACOCJA_10190) rlmH 2040352..2040831 (-) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACOCJA_RS10195 (ACOCJA_10195) adsA 2041197..2043518 (-) 2322 WP_000645765.1 LPXTG-anchored adenosine synthase AdsA -
  ACOCJA_RS10200 (ACOCJA_10200) vicX 2043745..2044545 (-) 801 WP_001807805.1 MBL fold metallo-hydrolase Regulator
  ACOCJA_RS10205 (ACOCJA_10205) - 2044933..2045721 (-) 789 WP_001104170.1 two-component system regulatory protein YycI -
  ACOCJA_RS10210 (ACOCJA_10210) yycH 2045722..2047056 (-) 1335 WP_001060144.1 two-component system activity regulator YycH -
  ACOCJA_RS10215 (ACOCJA_10215) walK 2047049..2048875 (-) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -

Sequence


Protein


Download         Length: 266 a.a.        Molecular weight: 30313.56 Da        Isoelectric Point: 6.5000

>NTDB_id=986970 ACOCJA_RS10200 WP_001807805.1 2043745..2044545(-) (vicX) [Staphylococcus aureus strain CBTW2018043]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIKDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=986970 ACOCJA_RS10200 WP_001807805.1 2043745..2044545(-) (vicX) [Staphylococcus aureus strain CBTW2018043]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTAAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATTCCTATGGATCAGAAATTTATTTTTAATCC
TTATGAAACGAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCGATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474


Multiple sequence alignment