Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHB48_RS06770 Genome accession   NZ_CP152052
Coordinates   1460449..1461705 (+) Length   418 a.a.
NCBI ID   WP_342600744.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1455449..1466705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS06745 (MHB48_06745) - 1455972..1457276 (+) 1305 WP_342600740.1 pitrilysin family protein -
  MHB48_RS06750 (MHB48_06750) - 1457269..1458000 (+) 732 WP_342600741.1 SDR family oxidoreductase -
  MHB48_RS06755 (MHB48_06755) - 1458124..1458930 (+) 807 WP_342600742.1 DUF3388 domain-containing protein -
  MHB48_RS06760 (MHB48_06760) - 1458947..1459798 (+) 852 WP_342600743.1 RodZ domain-containing protein -
  MHB48_RS06765 (MHB48_06765) pgsA 1459855..1460433 (+) 579 WP_340925146.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB48_RS06770 (MHB48_06770) cinA 1460449..1461705 (+) 1257 WP_342600744.1 competence/damage-inducible protein A Machinery gene
  MHB48_RS06775 (MHB48_06775) recA 1461882..1462943 (+) 1062 WP_342600745.1 recombinase RecA Machinery gene
  MHB48_RS06780 (MHB48_06780) rny 1463622..1465181 (+) 1560 WP_342600746.1 ribonuclease Y -
  MHB48_RS06785 (MHB48_06785) - 1465309..1466106 (+) 798 WP_342600747.1 TIGR00282 family metallophosphoesterase -
  MHB48_RS06790 (MHB48_06790) - 1466192..1466458 (+) 267 WP_340919285.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46005.10 Da        Isoelectric Point: 5.4959

>NTDB_id=986970 MHB48_RS06770 WP_342600744.1 1460449..1461705(+) (cinA) [Psychrobacillus sp. FSL H8-0483]
MKAEIIAVGSELLLGQISNTNARFISSQLAEIGIDVFFHTVVGDNPNRLLDSIKIAEERADLIIFTGGLGPTKDDLTKET
ISKHLNKKLVFDENAMIFIEDFFKRMNREMTENNKKQALVLEGCTVLENKHGMAPGMLLATKSHAYMLLPGPPKEMEPMF
QFEAKPLLLKLLHNETVIMSHVIRFYGIGEAELETKVQDLLDNQTNPTLAPLASDGEVTLRLTAKSDTEKDAWQKIEALQ
AEILHRVGKFVYGYNNDSLASKLRDILIENELTISAAESMTAGLFQSELAAVPGMGEALVGGMITYTEDVKIKQLGVNEA
IIKEFSVVSSQCAEEMAVRVKEKFNTNIGIGITGAAGPDGHGGQPAGTVWIGIAYGEMAPISYKLNLSGMRNTNRLRAVK
FTIHYLLQLLREQGNARI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=986970 MHB48_RS06770 WP_342600744.1 1460449..1461705(+) (cinA) [Psychrobacillus sp. FSL H8-0483]
ATGAAAGCTGAAATTATTGCTGTCGGTTCGGAATTGTTGTTGGGTCAAATATCCAATACAAACGCACGATTTATTTCTTC
CCAACTAGCGGAAATAGGTATCGATGTTTTTTTTCATACAGTTGTAGGTGATAATCCAAACCGTTTATTAGATTCCATTA
AAATTGCAGAAGAACGTGCGGATTTAATCATTTTTACAGGTGGATTAGGGCCAACTAAAGATGACTTGACAAAAGAGACC
ATCTCAAAGCATTTGAACAAAAAACTTGTATTCGATGAAAATGCAATGATTTTTATTGAAGATTTCTTTAAACGAATGAA
TCGTGAAATGACCGAAAATAATAAAAAGCAAGCACTTGTACTCGAAGGGTGCACGGTTTTAGAAAATAAACATGGAATGG
CACCTGGTATGTTATTAGCTACTAAAAGTCATGCCTATATGCTCCTTCCGGGACCACCAAAAGAAATGGAACCAATGTTT
CAATTTGAAGCTAAACCATTGCTACTAAAACTTTTACATAACGAAACAGTAATTATGTCACATGTTATTCGCTTCTATGG
AATTGGCGAAGCAGAATTAGAGACGAAAGTGCAAGATTTATTAGACAATCAGACAAATCCAACGCTTGCTCCACTGGCAT
CAGACGGAGAAGTTACTTTAAGGCTTACTGCTAAAAGTGATACAGAAAAGGATGCTTGGCAGAAGATCGAAGCTTTACAG
GCCGAGATTCTACATAGAGTTGGCAAGTTTGTGTATGGGTATAATAATGATTCGCTTGCTTCCAAACTAAGAGACATCTT
AATCGAAAATGAGTTAACGATTTCTGCTGCAGAAAGTATGACAGCGGGTTTATTCCAATCAGAACTTGCAGCTGTACCTG
GTATGGGTGAAGCGTTAGTAGGTGGAATGATTACTTATACAGAAGATGTGAAAATAAAACAATTAGGTGTTAATGAAGCG
ATCATTAAAGAGTTTAGCGTTGTTTCTAGTCAATGTGCAGAAGAAATGGCAGTTCGAGTGAAAGAAAAATTTAATACTAA
TATTGGTATTGGAATAACTGGAGCGGCTGGACCAGATGGACATGGCGGCCAACCAGCTGGTACTGTTTGGATTGGTATTG
CTTACGGAGAAATGGCACCTATTTCATATAAATTGAACCTTTCAGGTATGAGAAATACAAACAGACTTAGAGCAGTCAAA
TTTACCATTCACTATTTATTACAATTACTTCGTGAACAAGGAAATGCAAGAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.641

98.565

0.529
  cinA Streptococcus mitis SK321

46.482

95.215

0.443
  cinA Streptococcus mitis NCTC 12261

45.729

95.215

0.435
  cinA Streptococcus pneumoniae TIGR4

45.226

95.215

0.431
  cinA Streptococcus pneumoniae Rx1

44.975

95.215

0.428
  cinA Streptococcus pneumoniae R6

44.975

95.215

0.428
  cinA Streptococcus pneumoniae D39

44.724

95.215

0.426
  cinA Streptococcus mutans UA159

46.561

90.431

0.421

Multiple sequence alignment