Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHH33_RS11330 Genome accession   NZ_CP152050
Coordinates   2183148..2184206 (-) Length   352 a.a.
NCBI ID   WP_016427568.1    Uniprot ID   S2XKB3
Organism   Paenisporosarcina sp. FSL H8-0542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178148..2189206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH33_RS11315 (MHH33_11315) - 2180068..2180340 (-) 273 WP_016427565.1 stage V sporulation protein S -
  MHH33_RS11320 (MHH33_11320) - 2180428..2181225 (-) 798 WP_016427566.1 TIGR00282 family metallophosphoesterase -
  MHH33_RS11325 (MHH33_11325) rny 2181389..2182948 (-) 1560 WP_016427567.1 ribonuclease Y -
  MHH33_RS11330 (MHH33_11330) recA 2183148..2184206 (-) 1059 WP_016427568.1 recombinase RecA Machinery gene
  MHH33_RS11335 (MHH33_11335) cinA 2184666..2185916 (-) 1251 WP_342541798.1 competence/damage-inducible protein A Machinery gene
  MHH33_RS11340 (MHH33_11340) pgsA 2185931..2186509 (-) 579 WP_016427570.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHH33_RS11345 (MHH33_11345) - 2186558..2187421 (-) 864 WP_342541799.1 RodZ domain-containing protein -
  MHH33_RS11350 (MHH33_11350) - 2187438..2188235 (-) 798 WP_016427572.1 DUF3388 domain-containing protein -
  MHH33_RS11355 (MHH33_11355) - 2188425..2188682 (-) 258 WP_016427573.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38066.28 Da        Isoelectric Point: 4.9076

>NTDB_id=986879 MHH33_RS11330 WP_016427568.1 2183148..2184206(-) (recA) [Paenisporosarcina sp. FSL H8-0542]
MSDRKAALDMALKQIEKQFGKGSIMKLGEKTDREVLTTSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
AQAAGGQAAFIDAEHALDPIYAQNLGVNIDELLLSQPDTGEQALEICEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSKTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKSGNDFMGNKT
KIKVVKNKVAPPFRTAEVDVMYGQGISREGEIVDLGVEMDIVNKSGSWYAYNDDRLGQGRENAKQFLKDNPSTRNEIAQK
IRAAYGMMATAYTIAAHEEEEDEEFELLLDEK

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=986879 MHH33_RS11330 WP_016427568.1 2183148..2184206(-) (recA) [Paenisporosarcina sp. FSL H8-0542]
TTGAGCGATCGTAAAGCAGCGTTAGACATGGCGTTAAAACAAATTGAGAAACAATTCGGTAAAGGTTCTATTATGAAACT
TGGCGAAAAAACTGATCGTGAAGTATTGACTACTTCCAGCGGATCTCTTGCACTTGACGTGGCACTTGGTGTGGGCGGAT
ATCCAAGAGGACGTATTATTGAAATTTATGGACCTGAAAGCTCAGGTAAAACAACTGTGGCACTTCATGCGATTGCAGAA
GCACAAGCAGCTGGTGGACAAGCAGCTTTCATCGATGCTGAACATGCGCTTGATCCAATTTATGCACAAAATTTAGGCGT
AAACATAGATGAATTATTATTATCACAACCAGATACAGGTGAACAGGCATTAGAAATTTGTGAAGCACTTGTACGTAGTG
GTGCAGTTGATATCGTTGTTATTGACTCAGTTGCTGCACTTGTACCTAAAGCTGAAATTGAAGGCGATATGGGTGACTCT
CACGTAGGTCTTCAAGCGCGCTTGATGTCACAAGCTTTACGTAAATTGTCTGGTGCAATCAGCAAGTCAAAAACTACGGC
AATCTTCATCAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGTAACCCGGAGGTAACACCTGGTGGGCGCGCACTTA
AATTCTATAGTTCAGTGCGTCTAGAAGTCCGTCGTGCAGAAGCCATCAAGTCGGGTAACGATTTCATGGGGAACAAAACG
AAAATTAAAGTCGTTAAAAACAAAGTAGCACCTCCATTCCGTACTGCGGAAGTCGATGTTATGTATGGACAAGGGATTTC
ACGTGAAGGTGAAATCGTTGATTTAGGAGTCGAAATGGACATCGTGAACAAGAGCGGTTCTTGGTATGCATATAACGATG
ATCGTTTAGGCCAAGGACGCGAAAATGCAAAACAATTCCTTAAAGATAATCCTTCAACACGTAATGAGATTGCTCAAAAA
ATCCGTGCAGCTTATGGCATGATGGCCACAGCTTACACAATTGCAGCTCATGAGGAAGAAGAAGATGAAGAGTTTGAGTT
ATTACTAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S2XKB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.015

92.898

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

72.238

100

0.724
  recA Streptococcus mutans UA159

65.33

99.148

0.648
  recA Streptococcus pyogenes NZ131

64.773

100

0.648
  recA Streptococcus mitis NCTC 12261

67.069

94.034

0.631
  recA Streptococcus mitis SK321

67.069

94.034

0.631
  recA Lactococcus lactis subsp. cremoris KW2

66.465

94.034

0.625
  recA Streptococcus pneumoniae Rx1

66.465

94.034

0.625
  recA Streptococcus pneumoniae D39

66.465

94.034

0.625
  recA Streptococcus pneumoniae R6

66.465

94.034

0.625
  recA Streptococcus pneumoniae TIGR4

66.465

94.034

0.625
  recA Neisseria gonorrhoeae MS11

65.653

93.466

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.653

93.466

0.614
  recA Neisseria gonorrhoeae MS11

65.653

93.466

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.443

0.605
  recA Ralstonia pseudosolanacearum GMI1000

64.634

93.182

0.602
  recA Vibrio cholerae strain A1552

65

90.909

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65

90.909

0.591
  recA Acinetobacter baylyi ADP1

60.465

97.727

0.591
  recA Pseudomonas stutzeri DSM 10701

60.882

96.591

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

92.898

0.585
  recA Glaesserella parasuis strain SC1401

60.294

96.591

0.582
  recA Acinetobacter baumannii D1279779

58.621

98.864

0.58
  recA Helicobacter pylori strain NCTC11637

62.462

92.33

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.761

0.574
  recA Helicobacter pylori 26695

62.154

92.33

0.574

Multiple sequence alignment