Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHH33_RS11335 Genome accession   NZ_CP152050
Coordinates   2184666..2185916 (-) Length   416 a.a.
NCBI ID   WP_342541798.1    Uniprot ID   -
Organism   Paenisporosarcina sp. FSL H8-0542     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2179666..2190916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH33_RS11315 (MHH33_11315) - 2180068..2180340 (-) 273 WP_016427565.1 stage V sporulation protein S -
  MHH33_RS11320 (MHH33_11320) - 2180428..2181225 (-) 798 WP_016427566.1 TIGR00282 family metallophosphoesterase -
  MHH33_RS11325 (MHH33_11325) rny 2181389..2182948 (-) 1560 WP_016427567.1 ribonuclease Y -
  MHH33_RS11330 (MHH33_11330) recA 2183148..2184206 (-) 1059 WP_016427568.1 recombinase RecA Machinery gene
  MHH33_RS11335 (MHH33_11335) cinA 2184666..2185916 (-) 1251 WP_342541798.1 competence/damage-inducible protein A Machinery gene
  MHH33_RS11340 (MHH33_11340) pgsA 2185931..2186509 (-) 579 WP_016427570.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHH33_RS11345 (MHH33_11345) - 2186558..2187421 (-) 864 WP_342541799.1 RodZ domain-containing protein -
  MHH33_RS11350 (MHH33_11350) - 2187438..2188235 (-) 798 WP_016427572.1 DUF3388 domain-containing protein -
  MHH33_RS11355 (MHH33_11355) - 2188425..2188682 (-) 258 WP_016427573.1 DUF3243 domain-containing protein -
  MHH33_RS11360 (MHH33_11360) - 2188726..2189454 (-) 729 WP_342541800.1 SDR family oxidoreductase -
  MHH33_RS11365 (MHH33_11365) - 2189451..2190755 (-) 1305 WP_016427575.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45119.36 Da        Isoelectric Point: 4.6267

>NTDB_id=986880 MHH33_RS11335 WP_342541798.1 2184666..2185916(-) (cinA) [Paenisporosarcina sp. FSL H8-0542]
MNAEIIAVGSELLLGQITNTNARYISSQLAELGVNVYYHTVVGDNAERLKQAIELAETRADLIVFSGGLGPTKDDLTKET
IARHVGTDLVMDETALISIEAFFNRINRPMTENNKKQALVLDGCEVLANHNGMAPGMFYSKGNHVYILLPGPPKEMEPMF
QLEAKPVLAKWLNQGEVIISHVLRFYGIGEAELETRIMDLLDAQTNPTIAPLASDGEVTLRITAKTSTEEEALKLIQETE
QVLLSRVGDYLYGYNDDSLASSASKLLIEQGLTISAAESLTAGLFQSELAAIPGVSQTLVGGVVTYTAESKMNQLGVSKD
IIDQYGVVSAECATAMASRVKAMFQTDIGVGLTGAAGPNSHDNKPAGTVWIAISLPNDDVVTHELHLSDMRNTNRLRAVM
RTFHYLIQLLSNNQAQ

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=986880 MHH33_RS11335 WP_342541798.1 2184666..2185916(-) (cinA) [Paenisporosarcina sp. FSL H8-0542]
ATGAATGCTGAAATTATTGCAGTAGGATCTGAACTGTTGCTTGGACAAATCACAAATACAAATGCACGCTATATTTCGAG
TCAACTGGCTGAACTGGGTGTCAATGTCTATTATCATACGGTAGTTGGTGATAACGCGGAGCGTTTAAAACAAGCGATTG
AATTGGCTGAAACACGAGCGGATCTAATTGTATTCTCTGGTGGACTTGGTCCAACCAAGGACGACTTGACGAAAGAAACT
ATTGCAAGGCACGTAGGAACGGACCTTGTTATGGACGAGACCGCACTGATTTCCATTGAAGCATTCTTTAACCGTATAAA
CCGTCCGATGACTGAAAATAACAAGAAGCAGGCTCTTGTACTTGATGGCTGTGAAGTGTTGGCTAATCATAACGGTATGG
CTCCGGGGATGTTCTATTCAAAAGGAAACCATGTGTATATCCTTCTGCCTGGACCTCCTAAAGAAATGGAACCAATGTTT
CAATTAGAAGCAAAGCCCGTTTTGGCGAAATGGCTGAATCAAGGAGAAGTGATTATTTCACACGTCCTTCGTTTTTATGG
AATCGGTGAAGCGGAGCTTGAAACACGGATTATGGATTTACTGGATGCCCAAACTAATCCAACTATTGCGCCACTAGCTT
CCGATGGGGAAGTCACTTTGCGGATTACCGCCAAAACTTCTACAGAAGAAGAAGCCCTAAAATTGATTCAAGAAACTGAA
CAAGTATTACTTTCACGCGTAGGAGATTATTTATACGGTTACAACGATGACTCGCTTGCATCAAGTGCAAGCAAATTATT
AATAGAGCAAGGATTGACGATATCGGCAGCTGAAAGTTTGACTGCTGGATTATTCCAATCAGAACTGGCTGCCATCCCTG
GTGTAAGTCAAACATTGGTTGGTGGTGTGGTTACATACACAGCGGAGTCGAAAATGAATCAGCTCGGAGTCTCAAAAGAC
ATCATCGACCAATATGGAGTTGTGAGTGCTGAATGTGCGACTGCCATGGCCAGTAGGGTGAAAGCAATGTTCCAAACGGA
TATAGGCGTCGGACTGACAGGTGCAGCTGGTCCTAACTCTCATGATAATAAGCCAGCAGGCACTGTGTGGATCGCAATCA
GCCTTCCTAATGATGATGTGGTGACTCACGAACTGCATTTAAGCGATATGCGTAATACCAATCGTCTGAGAGCAGTGATG
AGGACGTTCCATTATTTGATTCAATTGCTATCAAACAATCAAGCACAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.257

98.317

0.543
  cinA Streptococcus mutans UA159

43.301

100

0.435
  cinA Streptococcus mitis SK321

45.17

92.067

0.416
  cinA Streptococcus mitis NCTC 12261

44.909

92.067

0.413
  cinA Streptococcus pneumoniae TIGR4

44.648

92.067

0.411
  cinA Streptococcus pneumoniae Rx1

44.386

92.067

0.409
  cinA Streptococcus pneumoniae R6

44.386

92.067

0.409
  cinA Streptococcus pneumoniae D39

44.125

92.067

0.406
  cinA Streptococcus suis isolate S10

39.37

91.587

0.361

Multiple sequence alignment