Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHB40_RS05835 Genome accession   NZ_CP152047
Coordinates   1251447..1252508 (+) Length   353 a.a.
NCBI ID   WP_205442026.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-0057     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246447..1257508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB40_RS05810 (MHB40_05810) - 1247179..1247436 (+) 258 WP_342534096.1 DUF3243 domain-containing protein -
  MHB40_RS05815 (MHB40_05815) - 1247653..1248438 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  MHB40_RS05820 (MHB40_05820) - 1248455..1249384 (+) 930 WP_342534097.1 helix-turn-helix domain-containing protein -
  MHB40_RS05825 (MHB40_05825) pgsA 1249432..1250010 (+) 579 WP_342534098.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB40_RS05830 (MHB40_05830) cinA 1250027..1251286 (+) 1260 WP_342534750.1 competence/damage-inducible protein A Machinery gene
  MHB40_RS05835 (MHB40_05835) recA 1251447..1252508 (+) 1062 WP_205442026.1 recombinase RecA Machinery gene
  MHB40_RS05840 (MHB40_05840) rny 1253033..1254592 (+) 1560 WP_205442027.1 ribonuclease Y -
  MHB40_RS05845 (MHB40_05845) - 1254709..1255506 (+) 798 WP_342534099.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  MHB40_RS05850 (MHB40_05850) - 1255526..1256683 (+) 1158 WP_342534100.1 O-antigen ligase family protein -
  MHB40_RS05855 (MHB40_05855) - 1256752..1257468 (+) 717 WP_342534101.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37991.09 Da        Isoelectric Point: 4.6805

>NTDB_id=986742 MHB40_RS05835 WP_205442026.1 1251447..1252508(+) (recA) [Lysinibacillus sp. FSL K6-0057]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENVAVQEDIANK
IRASYGIAASSYTIAAHDEEEMDEELMSLLEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=986742 MHB40_RS05835 WP_205442026.1 1251447..1252508(+) (recA) [Lysinibacillus sp. FSL K6-0057]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCCATCATGAAACT
CGGTGAAAAAACCGATTTAGAAATTGCAACATCTTCAAGTGGTTCACTAGCACTTGATGCTGCATTAGGAGTGGGTGGAT
ATCCACGTGGACGTATCATTGAAGTATATGGTCCCGAATCATCTGGTAAAACAACAGTTGCTTTACATGCTATTGCTGAA
GTACAGGCAACAGGTGGACAAGCAGCATTTATCGACGCGGAGCATGCATTAGACCCAATCTATGCACAAAAATTAGGTGT
CAATATTGATGAGCTATTATTATCACAGCCCGACACAGGTGAGCAAGCACTTGAAATCGCAGAAGCATTAGTGCGTAGTG
GTGCTATTGATATTATCGTTATTGACTCTGTTGCTGCCTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCT
CATGTCGGCTTACAAGCACGTTTAATGTCTCAAGCTTTACGTAAACTTTCAGGTGCGATTAATAAATCAAAAACAATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTCATGTTCGGTAATCCAGAAACAACACCAGGTGGACGTGCGCTTA
AATTCTACAGCTCTGTCCGTTTAGAAGTGCGTCGTGCAGAAGCTATTAAACAAGGTAATGATATTGTTGGTAACCGTACT
AAAATTAAAATTGTTAAAAATAAAGTAGCACCACCTTTCCGTACAGCTGAGGTAGATATTATGTATGGAGAAGGAATTTC
TAAAGAAGGCGAAACAGTGGATTTAGGCGTGGAATTAGACATTGTGCAAAAAAGTGGTTCTTGGTATGCATATGGTGACG
AGCGCTTAGGTCAAGGACGAGAAAATGCTAAACAGTATTTAAAAGAAAATGTTGCTGTTCAGGAAGATATAGCAAATAAA
ATTCGAGCTTCTTATGGTATTGCGGCTTCTTCTTATACAATTGCTGCACATGATGAAGAAGAGATGGATGAAGAATTAAT
GTCACTTCTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.635

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.351

0.7
  recA Streptococcus mutans UA159

64.756

98.867

0.64
  recA Streptococcus mitis SK321

67.879

93.484

0.635
  recA Streptococcus pneumoniae D39

67.576

93.484

0.632
  recA Streptococcus pneumoniae R6

67.576

93.484

0.632
  recA Streptococcus pneumoniae TIGR4

67.576

93.484

0.632
  recA Streptococcus pneumoniae Rx1

67.576

93.484

0.632
  recA Streptococcus mitis NCTC 12261

67.576

93.484

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.484

0.623
  recA Streptococcus pyogenes NZ131

67.073

92.918

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.35

93.201

0.609
  recA Neisseria gonorrhoeae MS11

65.35

93.201

0.609
  recA Neisseria gonorrhoeae MS11

65.35

93.201

0.609
  recA Acinetobacter baylyi ADP1

61.494

98.584

0.606
  recA Helicobacter pylori strain NCTC11637

64.615

92.068

0.595
  recA Helicobacter pylori 26695

64.308

92.068

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.635

0.592
  recA Acinetobacter baumannii D1279779

60.997

96.601

0.589
  recA Glaesserella parasuis strain SC1401

59.143

99.15

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.351

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

92.351

0.584
  recA Vibrio cholerae strain A1552

63.75

90.652

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.652

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572
  recA Pseudomonas stutzeri DSM 10701

62.928

90.935

0.572

Multiple sequence alignment