Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHB40_RS05830 Genome accession   NZ_CP152047
Coordinates   1250027..1251286 (+) Length   419 a.a.
NCBI ID   WP_342534750.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-0057     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1245027..1256286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB40_RS05800 (MHB40_05800) - 1245109..1246410 (+) 1302 WP_342534095.1 pitrilysin family protein -
  MHB40_RS05805 (MHB40_05805) - 1246407..1247135 (+) 729 WP_342442726.1 SDR family oxidoreductase -
  MHB40_RS05810 (MHB40_05810) - 1247179..1247436 (+) 258 WP_342534096.1 DUF3243 domain-containing protein -
  MHB40_RS05815 (MHB40_05815) - 1247653..1248438 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  MHB40_RS05820 (MHB40_05820) - 1248455..1249384 (+) 930 WP_342534097.1 helix-turn-helix domain-containing protein -
  MHB40_RS05825 (MHB40_05825) pgsA 1249432..1250010 (+) 579 WP_342534098.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB40_RS05830 (MHB40_05830) cinA 1250027..1251286 (+) 1260 WP_342534750.1 competence/damage-inducible protein A Machinery gene
  MHB40_RS05835 (MHB40_05835) recA 1251447..1252508 (+) 1062 WP_205442026.1 recombinase RecA Machinery gene
  MHB40_RS05840 (MHB40_05840) rny 1253033..1254592 (+) 1560 WP_205442027.1 ribonuclease Y -
  MHB40_RS05845 (MHB40_05845) - 1254709..1255506 (+) 798 WP_342534099.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45094.48 Da        Isoelectric Point: 4.7043

>NTDB_id=986741 MHB40_RS05830 WP_342534750.1 1250027..1251286(+) (cinA) [Lysinibacillus sp. FSL K6-0057]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDCTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAGQLIAAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQQ
LIDTHGVVSAECAAAMASAVRKKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAIDDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=986741 MHB40_RS05830 WP_342534750.1 1250027..1251286(+) (cinA) [Lysinibacillus sp. FSL K6-0057]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
TCAATTATCCGAGCTAGGCATAAACGTTTTTTATCACACCGTAGTTGGTGATAATGCGAAACGTCTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTTATTATTTTTTCGGGAGGACTTGGACCTACGAAAGATGATTTAACAAAGGAAACG
ATTGCACGTCATCTTGGAGTTTCTCTTGAGTTTGATGAAGTAGCATTAACATATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCTGGAAGTGAAGTACTAGCCAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATTGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTGGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGTTTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAGATATTTTAGATGCACAAACTAATCCAACAGTTGCCCCACTGGCTT
CTGATGGAGAGGTAACGTTACGCGTAACAGCCAAAGCCGCAACAGAGCAGCAAGCCGGGCAGCTTATTGCGGCAAAGGTT
GCAGAGATACAGGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCTCTTGCCTCAAAAACGGTTGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACAGCTGGGTTATTTCAATCTGAGCTTGCGGAAATTCCAG
GAGTAGGAAATGCGCTTATAGGAGGCGTTGTTACCTATGCAGCTGATGCGAAAGTAAAACAGCTAGGCATATCACAGCAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGCGCTGTTCGTAAGAAATTTGCTACAAA
TATTGGGATTGGTCTTACTGGAGAAGCAGGTCCTACAGCGCATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATCGATGATGAGGAGCCACTTACCTATTTACTTCATTTATCAGGCATGCGGAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCATTATTTAATGCAACTTTTAGAAGAACGTGGCTATACAAAACGTTATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus pneumoniae TIGR4

45.195

91.885

0.415
  cinA Streptococcus mitis SK321

45.195

91.885

0.415
  cinA Streptococcus pneumoniae Rx1

45.195

91.885

0.415
  cinA Streptococcus pneumoniae R6

45.195

91.885

0.415
  cinA Streptococcus pneumoniae D39

44.935

91.885

0.413
  cinA Streptococcus mitis NCTC 12261

44.416

91.885

0.408
  cinA Streptococcus mutans UA159

44.063

90.453

0.399

Multiple sequence alignment