Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHB51_RS06400 Genome accession   NZ_CP152046
Coordinates   1334698..1335765 (-) Length   355 a.a.
NCBI ID   WP_107942314.1    Uniprot ID   -
Organism   Metasolibacillus sp. FSL K6-0083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329698..1340765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB51_RS06375 (MHB51_06375) - 1330503..1330916 (-) 414 WP_342559248.1 hypothetical protein -
  MHB51_RS06380 (MHB51_06380) - 1331019..1331285 (-) 267 WP_042472077.1 stage V sporulation protein S -
  MHB51_RS06385 (MHB51_06385) - 1331422..1331709 (+) 288 WP_066170234.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  MHB51_RS06390 (MHB51_06390) - 1331737..1332534 (-) 798 WP_342559249.1 TIGR00282 family metallophosphoesterase -
  MHB51_RS06395 (MHB51_06395) rny 1332871..1334433 (-) 1563 WP_066170328.1 ribonuclease Y -
  MHB51_RS06400 (MHB51_06400) recA 1334698..1335765 (-) 1068 WP_107942314.1 recombinase RecA Machinery gene
  MHB51_RS06405 (MHB51_06405) cinA 1336074..1337315 (-) 1242 WP_342559250.1 competence/damage-inducible protein A Machinery gene
  MHB51_RS06410 (MHB51_06410) pgsA 1337331..1337909 (-) 579 WP_066170224.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB51_RS06415 (MHB51_06415) - 1337969..1338847 (-) 879 WP_342559251.1 helix-turn-helix domain-containing protein -
  MHB51_RS06420 (MHB51_06420) - 1338865..1339650 (-) 786 WP_066170218.1 DUF3388 domain-containing protein -
  MHB51_RS06425 (MHB51_06425) - 1340353..1340610 (-) 258 WP_066170215.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38271.46 Da        Isoelectric Point: 4.7494

>NTDB_id=986710 MHB51_RS06400 WP_107942314.1 1334698..1335765(-) (recA) [Metasolibacillus sp. FSL K6-0083]
MSDRKAALEQALKQIEKQFGKGSIMKLGETTDREIATSSSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTLAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAETIKQGNDMVGNKT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGEIVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQFLKENVAVREEIADK
IRQSYGIAAANYTIGGHEEDEEMDEELSLLLGEEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=986710 MHB51_RS06400 WP_107942314.1 1334698..1335765(-) (recA) [Metasolibacillus sp. FSL K6-0083]
GTGAGTGATCGTAAAGCGGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGCAATTCGGTAAAGGTTCTATTATGAAGCT
AGGTGAAACGACAGATCGTGAAATTGCTACATCATCAAGCGGCTCGTTAGCATTGGATGCAGCGCTAGGAGTAGGTGGCT
ACCCACGTGGTCGTATTATCGAAATTTATGGACCTGAATCATCAGGTAAAACAACGGTTGCATTACATGCTATTGCTGAA
GTACAAGCAGCGGGGGGACAAGCAGCATTTATTGACGCAGAGCATGCGCTTGACCCGGTATACGCACAAAAGTTAGGCGT
AAATATCGACGAGTTATTATTATCACAGCCAGATACTGGTGAGCAGGCATTAGAAATTGCTGAAGCATTAGTACGCAGTG
GAGCAATTGATATATTAGTAATAGACTCTGTTGCAGCACTTGTACCAAAAGCAGAAATCGAAGGAGAGATGGGAGATTCA
CACGTAGGTTTACAAGCTCGTTTAATGTCACAAGCATTACGTAAGCTCTCTGGTGCGATTAATAAATCCAAAACATTGGC
TATTTTTATCAACCAAATACGTGAGAAAATCGGTGTTATGTTTGGTAACCCTGAAACGACTCCGGGTGGACGCGCATTAA
AATTCTACTCTTCCGTTCGATTGGAAGTGCGTCGTGCAGAAACAATTAAGCAAGGCAATGATATGGTTGGTAACAAAACG
AAAATTAAAATTGTTAAAAACAAAGTAGCGCCACCATTCCGTACGGCTGAAGTGGATATTATGTACGGTGAAGGTATTTC
CAAGGAAGGCGAAATTGTCGACTTAGGTGTTGAACTAGATATCGTCCAAAAGAGCGGCTCTTGGTACGCATATGGCGATG
AGCGATTAGGGCAAGGGCGTGAAAATGCCAAACAATTCCTAAAAGAAAATGTTGCTGTTCGTGAAGAAATCGCTGATAAA
ATTCGTCAATCTTACGGCATAGCTGCTGCCAACTATACAATTGGCGGTCATGAAGAAGACGAGGAAATGGACGAAGAATT
ATCTTTATTATTAGGTGAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.113

0.8
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

91.831

0.696
  recA Streptococcus pneumoniae TIGR4

62.534

100

0.654
  recA Streptococcus pneumoniae Rx1

62.534

100

0.654
  recA Streptococcus pneumoniae D39

62.534

100

0.654
  recA Streptococcus pneumoniae R6

62.534

100

0.654
  recA Streptococcus mitis NCTC 12261

63.812

100

0.651
  recA Streptococcus mitis SK321

63.435

100

0.645
  recA Streptococcus mutans UA159

63.687

100

0.642
  recA Lactococcus lactis subsp. cremoris KW2

66.97

92.958

0.623
  recA Streptococcus pyogenes NZ131

66.768

92.394

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.957

92.676

0.611
  recA Neisseria gonorrhoeae MS11

65.957

92.676

0.611
  recA Neisseria gonorrhoeae MS11

65.957

92.676

0.611
  recA Acinetobacter baumannii D1279779

61.032

98.31

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

95.775

0.6
  recA Acinetobacter baylyi ADP1

61.449

97.183

0.597
  recA Ralstonia pseudosolanacearum GMI1000

67.412

88.169

0.594
  recA Helicobacter pylori strain NCTC11637

64.308

91.549

0.589
  recA Helicobacter pylori 26695

64.308

91.549

0.589
  recA Glaesserella parasuis strain SC1401

64.688

90.141

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

92.113

0.583
  recA Pseudomonas stutzeri DSM 10701

62.614

92.676

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

90.423

0.577
  recA Vibrio cholerae strain A1552

63.863

90.423

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.438

90.141

0.572

Multiple sequence alignment