Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHI39_RS15695 Genome accession   NZ_CP152029
Coordinates   3105965..3106999 (-) Length   344 a.a.
NCBI ID   WP_058002722.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3100965..3111999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS15680 (MHI39_15680) spoVS 3102293..3102553 (-) 261 WP_058002725.1 stage V sporulation protein SpoVS -
  MHI39_RS15685 (MHI39_15685) - 3102729..3103529 (-) 801 WP_058002724.1 TIGR00282 family metallophosphoesterase -
  MHI39_RS15690 (MHI39_15690) rny 3103894..3105456 (-) 1563 WP_173720077.1 ribonuclease Y -
  MHI39_RS15695 (MHI39_15695) recA 3105965..3106999 (-) 1035 WP_058002722.1 recombinase RecA Machinery gene
  MHI39_RS15700 (MHI39_15700) cinA 3107262..3108497 (-) 1236 WP_342539683.1 competence/damage-inducible protein A Machinery gene
  MHI39_RS15705 (MHI39_15705) pgsA 3108519..3109100 (-) 582 WP_058002720.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI39_RS15710 (MHI39_15710) - 3109138..3110061 (-) 924 WP_259545729.1 RodZ domain-containing protein -
  MHI39_RS15715 (MHI39_15715) - 3110080..3110871 (-) 792 WP_058002718.1 DUF3388 domain-containing protein -
  MHI39_RS15720 (MHI39_15720) - 3111078..3111335 (-) 258 WP_058002717.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37562.82 Da        Isoelectric Point: 4.9964

>NTDB_id=985735 MHI39_RS15695 WP_058002722.1 3105965..3106999(-) (recA) [Heyndrickxia sp. FSL K6-6286]
MNDRQAALDMALKQIEKQFGKGSVMKLGEQTDRRISTVPSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDMASELDIIQKSGSWYSYNDERLGQGRENAKLFLKENPELRNEVMMK
IRDHYGLDDQKTAPAEEEQEEFDI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=985735 MHI39_RS15695 WP_058002722.1 3105965..3106999(-) (recA) [Heyndrickxia sp. FSL K6-6286]
GTGAATGATCGTCAAGCAGCCTTGGATATGGCGTTAAAACAAATAGAAAAACAGTTTGGTAAAGGTTCAGTAATGAAACT
TGGGGAACAAACTGATAGAAGAATTTCAACTGTTCCTAGTGGATCATTGGCCCTTGATGTAGCGTTAGGTGTTGGCGGAT
ACCCAAGAGGACGTGTAATAGAAATCTATGGTCCAGAAAGCTCAGGTAAAACAACTGTTGCCCTACATGCTATTGCAGAG
GTACAAGCTAAGGGTGGGCAAGCAGCGTTTATCGATGCTGAGCATGCACTAGATCCTGTATATGCCCAAAAATTAGGCGT
TAATATTGATGAACTACTGTTATCTCAGCCAGATACTGGGGAGCAAGCGTTAGAAATTGCAGAAGCTCTTGTTCGTAGTG
GAGCAATTGATATTATCGTTATCGATTCTGTTGCAGCACTTGTACCAAAAGCGGAAATTGAAGGTGAAATGGGTGACTCC
CATGTCGGATTACAAGCACGCTTAATGTCACAGGCATTGCGTAAACTATCTGGTGCAATCAACAAGTCGAAAACAATCGC
GATCTTTATTAACCAAATAAGGGAAAAAGTAGGGGTTATGTTCGGGAATCCTGAAACGACTCCTGGCGGCCGTGCACTTA
AGTTTTATTCATCTGTACGTCTTGAGGTTCGTCGTGCAGAACAGTTGAAACAAGGAAATGATATTGTTGGAAATAAAACA
AAAGTAAAAGTAGTAAAAAATAAAGTGGCACCACCTTTCCGCGTTGCGGAAGTTGATATTATGTATGGTGAAGGAATTTC
TAAAGAAGGCGAAATCATTGATATGGCTTCTGAATTAGATATCATTCAAAAAAGTGGATCATGGTATTCATATAATGATG
AACGTTTAGGTCAAGGTCGTGAAAATGCGAAGCTTTTCCTTAAGGAAAATCCTGAATTGCGTAATGAGGTTATGATGAAA
ATACGCGATCATTATGGATTAGATGATCAAAAGACTGCCCCTGCTGAGGAAGAGCAAGAGGAATTTGATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.45

95.64

0.846
  recA Latilactobacillus sakei subsp. sakei 23K

73.314

99.128

0.727
  recA Streptococcus mitis SK321

67.638

99.709

0.674
  recA Streptococcus mutans UA159

66.189

100

0.672
  recA Streptococcus pneumoniae Rx1

68.882

96.221

0.663
  recA Streptococcus mitis NCTC 12261

68.882

96.221

0.663
  recA Streptococcus pneumoniae D39

68.882

96.221

0.663
  recA Streptococcus pneumoniae R6

68.882

96.221

0.663
  recA Streptococcus pneumoniae TIGR4

68.882

96.221

0.663
  recA Streptococcus pyogenes NZ131

68.997

95.64

0.66
  recA Lactococcus lactis subsp. cremoris KW2

66.964

97.674

0.654
  recA Ralstonia pseudosolanacearum GMI1000

66.361

95.058

0.631
  recA Neisseria gonorrhoeae strain FA1090

63.529

98.837

0.628
  recA Neisseria gonorrhoeae MS11

63.529

98.837

0.628
  recA Neisseria gonorrhoeae MS11

63.529

98.837

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

95.349

0.616
  recA Acinetobacter baylyi ADP1

61.449

100

0.616
  recA Acinetobacter baumannii D1279779

61.111

99.419

0.608
  recA Helicobacter pylori strain NCTC11637

61.111

99.419

0.608
  recA Helicobacter pylori 26695

61.111

99.419

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.29

99.128

0.608
  recA Glaesserella parasuis strain SC1401

60.641

99.709

0.605
  recA Pseudomonas stutzeri DSM 10701

59.593

100

0.596
  recA Vibrio cholerae strain A1552

63.24

93.314

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

93.314

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

94.477

0.587

Multiple sequence alignment