Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHI39_RS15700 Genome accession   NZ_CP152029
Coordinates   3107262..3108497 (-) Length   411 a.a.
NCBI ID   WP_342539683.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3102262..3113497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS15680 (MHI39_15680) spoVS 3102293..3102553 (-) 261 WP_058002725.1 stage V sporulation protein SpoVS -
  MHI39_RS15685 (MHI39_15685) - 3102729..3103529 (-) 801 WP_058002724.1 TIGR00282 family metallophosphoesterase -
  MHI39_RS15690 (MHI39_15690) rny 3103894..3105456 (-) 1563 WP_173720077.1 ribonuclease Y -
  MHI39_RS15695 (MHI39_15695) recA 3105965..3106999 (-) 1035 WP_058002722.1 recombinase RecA Machinery gene
  MHI39_RS15700 (MHI39_15700) cinA 3107262..3108497 (-) 1236 WP_342539683.1 competence/damage-inducible protein A Machinery gene
  MHI39_RS15705 (MHI39_15705) pgsA 3108519..3109100 (-) 582 WP_058002720.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI39_RS15710 (MHI39_15710) - 3109138..3110061 (-) 924 WP_259545729.1 RodZ domain-containing protein -
  MHI39_RS15715 (MHI39_15715) - 3110080..3110871 (-) 792 WP_058002718.1 DUF3388 domain-containing protein -
  MHI39_RS15720 (MHI39_15720) - 3111078..3111335 (-) 258 WP_058002717.1 DUF3243 domain-containing protein -
  MHI39_RS15725 (MHI39_15725) - 3111405..3112127 (-) 723 WP_259545730.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45573.44 Da        Isoelectric Point: 5.3877

>NTDB_id=985736 MHI39_RS15700 WP_342539683.1 3107262..3108497(-) (cinA) [Heyndrickxia sp. FSL K6-6286]
MNAEIIAVGSELLLGQIVNTNAKFISKGLAEIGVNVFHHTVVGDNPERLKKSIEIAEQRADLIIFTGGLGPTKDDLTKET
IAKHLNTKLVQDDDAMDSIEAYFKRTKKVMTENNKKQALILDGAKVLPNDYGMAPGMLLQQEEQYYMLLPGPPHEMEPMF
TQYGIIAIQEKMGTIEKIESRVLRFFGIGEAELETRVESILERQTNPTIAPLAANGEVTLRITAKHTSIEEAKKLIDKTE
KEILHLVGDYFYGYDETTIMAEVIKRLEREKLTIACAESLTAGLFQSEMASHSGVSSIFKGGIVCYSNEAKVKLVQVQEN
TIEQYGAVSRETAIELAENILQLLDSDIGISFTGVAGPDKLENKPAGTVWIGIARKNKPTKTYLLDLASSRNGNRVRTVK
YGCYYLLKELV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=985736 MHI39_RS15700 WP_342539683.1 3107262..3108497(-) (cinA) [Heyndrickxia sp. FSL K6-6286]
ATGAATGCTGAAATTATCGCTGTTGGTTCAGAGCTATTATTAGGTCAAATTGTTAATACGAATGCAAAGTTTATTTCGAA
AGGCTTGGCCGAAATCGGTGTAAATGTATTCCATCATACCGTCGTAGGGGATAACCCTGAACGGTTAAAGAAAAGTATTG
AAATCGCTGAACAACGAGCAGACTTAATTATTTTTACTGGTGGTCTTGGACCGACAAAAGATGATTTAACAAAGGAAACG
ATTGCTAAGCATCTGAATACGAAGCTTGTTCAAGACGATGATGCTATGGATTCAATTGAAGCCTACTTTAAACGAACAAA
AAAAGTGATGACAGAAAATAATAAAAAACAAGCACTGATTTTGGATGGTGCCAAAGTATTGCCAAATGATTATGGTATGG
CACCTGGGATGCTGTTACAGCAAGAAGAGCAATATTATATGCTACTTCCTGGACCTCCACATGAAATGGAACCGATGTTT
ACTCAGTATGGTATTATTGCGATCCAAGAAAAGATGGGAACGATTGAAAAAATCGAATCTAGAGTTTTAAGGTTTTTTGG
TATTGGTGAAGCTGAGCTGGAAACTAGAGTTGAAAGTATTTTGGAACGCCAAACTAATCCAACGATTGCCCCTCTTGCAG
CAAATGGTGAGGTAACGCTAAGAATTACGGCAAAACACACATCCATTGAAGAGGCGAAAAAATTAATCGATAAAACTGAG
AAAGAAATTCTTCATCTTGTCGGCGATTATTTTTATGGTTACGACGAGACAACCATCATGGCTGAAGTTATTAAACGATT
GGAAAGGGAGAAACTAACGATAGCATGTGCAGAAAGTTTAACTGCTGGTTTGTTTCAATCGGAAATGGCATCCCATTCTG
GAGTCAGTTCAATTTTTAAAGGTGGAATTGTCTGTTACTCTAATGAAGCAAAAGTGAAGCTTGTTCAGGTGCAAGAGAAT
ACGATTGAACAATATGGTGCAGTAAGCCGAGAGACAGCTATTGAGCTAGCAGAAAATATTCTCCAATTACTAGATTCTGA
TATTGGAATTAGTTTTACAGGAGTTGCTGGGCCTGATAAACTGGAAAATAAGCCGGCTGGTACGGTATGGATTGGAATTG
CAAGAAAAAATAAACCAACTAAGACCTATTTATTAGACCTCGCAAGCAGTAGAAATGGAAATCGAGTTCGAACAGTCAAA
TATGGTTGTTATTATCTATTAAAAGAATTAGTATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.088

99.27

0.577
  cinA Streptococcus pneumoniae TIGR4

50

93.431

0.467
  cinA Streptococcus mitis NCTC 12261

49.482

93.917

0.465
  cinA Streptococcus mitis SK321

49.482

93.917

0.465
  cinA Streptococcus pneumoniae Rx1

49.479

93.431

0.462
  cinA Streptococcus pneumoniae R6

49.479

93.431

0.462
  cinA Streptococcus pneumoniae D39

49.219

93.431

0.46
  cinA Streptococcus mutans UA159

46.115

97.08

0.448
  cinA Streptococcus suis isolate S10

39.683

91.971

0.365

Multiple sequence alignment