Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY94_RS07405 Genome accession   NZ_CP152021
Coordinates   1520162..1521229 (+) Length   355 a.a.
NCBI ID   WP_225215853.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-2843     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515162..1526229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY94_RS07380 (MKY94_07380) - 1515551..1516282 (+) 732 WP_144538112.1 SDR family oxidoreductase -
  MKY94_RS07385 (MKY94_07385) - 1516402..1517208 (+) 807 WP_144538113.1 YmfK family protein -
  MKY94_RS07390 (MKY94_07390) - 1517225..1518088 (+) 864 WP_144538114.1 helix-turn-helix domain-containing protein -
  MKY94_RS07395 (MKY94_07395) pgsA 1518139..1518717 (+) 579 WP_144538115.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY94_RS07400 (MKY94_07400) cinA 1518733..1519989 (+) 1257 WP_342578327.1 competence/damage-inducible protein A Machinery gene
  MKY94_RS07405 (MKY94_07405) recA 1520162..1521229 (+) 1068 WP_225215853.1 recombinase RecA Machinery gene
  MKY94_RS07410 (MKY94_07410) rny 1521831..1523384 (+) 1554 WP_144538257.1 ribonuclease Y -
  MKY94_RS07415 (MKY94_07415) - 1523461..1524258 (+) 798 WP_151110486.1 TIGR00282 family metallophosphoesterase -
  MKY94_RS07420 (MKY94_07420) - 1524345..1524611 (+) 267 WP_144538118.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38492.78 Da        Isoelectric Point: 4.8021

>NTDB_id=985277 MKY94_RS07405 WP_225215853.1 1520162..1521229(+) (recA) [Psychrobacillus sp. FSL K6-2843]
MANDRKAALEMALKQIEKQFGKGSVMKLGEKTDREISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIA
EIQKTGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEIIVIDSVAALVPKAEIEGEMGD
SHIGLQARLMSQALRKLSGVINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIMGNK
TKIKVVKNKVAPPFKTAEVDIMYGEGISQEGEIVDIGSEYDIIQKSGSWYAYNEERIGQGRENAKQFLKENPAIKDEIAS
KIRQSLGMTSNSFVIAAHEQEEEDGEFELLLDDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=985277 MKY94_RS07405 WP_225215853.1 1520162..1521229(+) (recA) [Psychrobacillus sp. FSL K6-2843]
TTGGCTAATGATCGTAAAGCAGCGTTAGAAATGGCTTTAAAACAAATAGAGAAGCAATTTGGGAAAGGTTCAGTTATGAA
GCTAGGAGAGAAAACAGACCGTGAAATCTCCACTTCTTCAAGTGGTTCCCTAGCTTTGGATGCAGCTCTTGGAATAGGCG
GATATCCACGTGGCCGTATTATTGAAATCTATGGACCTGAAAGCTCAGGTAAAACAACAGTAGCTCTTCACGCAATTGCA
GAAATTCAAAAAACTGGTGGCCAAGCAGCATTTATTGATGCTGAGCATGCATTGGACCCTGTCTATGCACAAAAACTAGG
CGTTAATATCGATGAATTATTATTATCTCAACCTGACACTGGAGAGCAAGCCCTTGAAATCGCAGAAGCTCTAGTTCGCA
GTGGTGCGGTTGAAATCATAGTTATTGATTCCGTAGCAGCTTTAGTACCAAAAGCAGAGATAGAAGGGGAAATGGGAGAT
TCTCATATCGGTCTTCAAGCTCGCTTAATGTCTCAGGCTTTGCGTAAGCTTTCTGGTGTTATTAACAAATCTAACACGAT
AGCTATTTTCATCAACCAGATTCGTGAAAAAGTAGGCGTAATGTTTGGTAACCCAGAGGTAACACCAGGTGGTCGTGCGC
TTAAATTCTATAGTTCCGTTCGCTTGGAAGTAAGACGTGCAGAAGCTATTAAACAAGGTACTGACATTATGGGGAACAAA
ACAAAAATTAAAGTAGTAAAAAATAAAGTTGCTCCACCATTTAAAACAGCAGAAGTAGACATTATGTATGGAGAAGGGAT
TTCTCAAGAAGGAGAAATCGTCGACATAGGTTCTGAATACGATATTATCCAAAAAAGCGGTTCTTGGTATGCATACAATG
AAGAACGCATAGGTCAAGGGCGAGAAAACGCTAAACAATTCTTGAAGGAAAATCCTGCTATTAAAGACGAAATCGCATCA
AAAATTCGTCAATCTTTAGGAATGACTTCAAATTCATTTGTTATTGCAGCACATGAACAAGAGGAAGAAGACGGCGAATT
CGAGCTACTTTTAGATGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.337

93.521

0.789
  recA Latilactobacillus sakei subsp. sakei 23K

72.316

99.718

0.721
  recA Streptococcus mutans UA159

68.976

93.521

0.645
  recA Streptococcus pyogenes NZ131

68.882

93.239

0.642
  recA Lactococcus lactis subsp. cremoris KW2

67.463

94.366

0.637
  recA Streptococcus pneumoniae Rx1

68.693

92.676

0.637
  recA Streptococcus pneumoniae D39

68.693

92.676

0.637
  recA Streptococcus pneumoniae R6

68.693

92.676

0.637
  recA Streptococcus pneumoniae TIGR4

68.693

92.676

0.637
  recA Streptococcus mitis NCTC 12261

68.693

92.676

0.637
  recA Streptococcus mitis SK321

68.085

92.676

0.631
  recA Neisseria gonorrhoeae MS11

63.689

97.746

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.689

97.746

0.623
  recA Neisseria gonorrhoeae MS11

63.689

97.746

0.623
  recA Vibrio cholerae strain A1552

61.96

97.746

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.96

97.746

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.244

92.394

0.603
  recA Acinetobacter baylyi ADP1

61.671

97.746

0.603
  recA Glaesserella parasuis strain SC1401

60.857

98.592

0.6
  recA Acinetobacter baumannii D1279779

61.628

96.901

0.597
  recA Pseudomonas stutzeri DSM 10701

63.03

92.958

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.641

96.62

0.586
  recA Helicobacter pylori strain NCTC11637

63.077

91.549

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

92.958

0.577
  recA Helicobacter pylori 26695

62.769

91.549

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

91.831

0.555

Multiple sequence alignment