Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY94_RS07400 Genome accession   NZ_CP152021
Coordinates   1518733..1519989 (+) Length   418 a.a.
NCBI ID   WP_342578327.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-2843     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1513733..1524989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY94_RS07375 (MKY94_07375) - 1514254..1515558 (+) 1305 WP_144538111.1 pitrilysin family protein -
  MKY94_RS07380 (MKY94_07380) - 1515551..1516282 (+) 732 WP_144538112.1 SDR family oxidoreductase -
  MKY94_RS07385 (MKY94_07385) - 1516402..1517208 (+) 807 WP_144538113.1 YmfK family protein -
  MKY94_RS07390 (MKY94_07390) - 1517225..1518088 (+) 864 WP_144538114.1 helix-turn-helix domain-containing protein -
  MKY94_RS07395 (MKY94_07395) pgsA 1518139..1518717 (+) 579 WP_144538115.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY94_RS07400 (MKY94_07400) cinA 1518733..1519989 (+) 1257 WP_342578327.1 competence/damage-inducible protein A Machinery gene
  MKY94_RS07405 (MKY94_07405) recA 1520162..1521229 (+) 1068 WP_225215853.1 recombinase RecA Machinery gene
  MKY94_RS07410 (MKY94_07410) rny 1521831..1523384 (+) 1554 WP_144538257.1 ribonuclease Y -
  MKY94_RS07415 (MKY94_07415) - 1523461..1524258 (+) 798 WP_151110486.1 TIGR00282 family metallophosphoesterase -
  MKY94_RS07420 (MKY94_07420) - 1524345..1524611 (+) 267 WP_144538118.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45943.78 Da        Isoelectric Point: 4.9445

>NTDB_id=985276 MKY94_RS07400 WP_342578327.1 1518733..1519989(+) (cinA) [Psychrobacillus sp. FSL K6-2843]
MKAEIIAVGSELLLGQISNTNARFISSQLAELGIDVYYHTVVGDNPNRLLDSIKIAEERADLIIFSGGLGPTKDDLTKET
IAKHLNKNLVLDDHAIMYIEDFFKRSGRMMTENNKKQALVLEGCTVLENKHGMAPGMLLSTENHAYMLLPGPPKELEPMF
QFEAKPLLPKLLYKENVIMSHVIRFYGIGEAELETQVQDLLDNQTNPTLAPLASDGEVTLRLTAKADTEEEAWKSIEMLQ
AEILNRVGKYVYGYNNESLASKLRDILIDNELTISAAESMTAGLFQSELAAVPGMGVALVGGVITYTEEVKINQLGVKKE
TIDEHSVVSSQVAEEMAIRVKEKFNTTIGVGITGAAGPDGHGDQPAGTVWIGIAYGDVAPISYKLNLSGMRNTNRLRTVK
FAIHYLIRILREEGLSKI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=985276 MKY94_RS07400 WP_342578327.1 1518733..1519989(+) (cinA) [Psychrobacillus sp. FSL K6-2843]
ATGAAAGCAGAGATTATTGCGGTAGGTTCAGAGCTATTATTAGGTCAGATTTCTAATACAAATGCCCGATTCATATCTTC
CCAGCTTGCGGAGTTAGGGATAGACGTATATTACCATACGGTAGTTGGAGATAATCCCAATCGGTTATTAGACTCCATCA
AAATCGCAGAAGAACGAGCAGACCTAATTATTTTTTCAGGAGGTTTAGGGCCTACTAAGGACGACCTAACAAAAGAAACA
ATTGCTAAACACCTTAACAAAAATCTTGTACTTGATGATCACGCGATTATGTATATAGAAGATTTCTTTAAAAGATCAGG
AAGAATGATGACTGAGAATAACAAAAAACAAGCGCTGGTTTTAGAAGGCTGTACAGTCTTGGAAAACAAGCATGGGATGG
CTCCAGGAATGCTTCTTTCAACAGAGAACCATGCATATATGTTATTACCTGGGCCCCCAAAGGAATTGGAACCGATGTTC
CAATTTGAGGCTAAGCCACTACTACCTAAGTTGTTGTATAAAGAAAACGTTATTATGTCTCATGTAATACGCTTTTATGG
AATAGGAGAAGCAGAGTTAGAGACACAGGTCCAAGACTTGTTAGACAATCAAACAAATCCAACTTTAGCTCCTTTGGCTT
CTGATGGAGAGGTAACGTTAAGACTTACTGCGAAAGCAGACACTGAGGAAGAAGCATGGAAAAGCATTGAAATGCTACAG
GCTGAAATTTTAAACCGTGTCGGTAAATATGTGTATGGCTATAATAACGAATCACTTGCCTCGAAGTTAAGAGATATTCT
AATTGACAATGAACTAACAATATCTGCTGCAGAAAGTATGACGGCAGGTCTTTTCCAATCAGAGTTGGCAGCGGTCCCGG
GAATGGGGGTTGCGCTAGTAGGTGGTGTTATCACTTACACTGAAGAAGTAAAAATCAATCAACTAGGTGTTAAGAAGGAA
ACCATTGATGAACACAGTGTAGTCTCTAGTCAGGTTGCCGAGGAGATGGCAATCCGTGTTAAAGAGAAATTTAATACAAC
AATTGGTGTAGGTATCACTGGAGCTGCAGGTCCAGACGGACATGGCGACCAACCGGCCGGTACGGTTTGGATTGGAATTG
CCTATGGGGACGTTGCGCCAATATCCTATAAATTGAATCTTTCAGGCATGAGAAACACGAATAGATTAAGAACTGTGAAA
TTTGCAATCCATTATCTTATCCGTATACTCAGAGAAGAGGGACTTTCAAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.883

98.565

0.531
  cinA Streptococcus mitis SK321

45.176

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.706

100

0.455
  cinA Streptococcus pneumoniae TIGR4

44.706

100

0.455
  cinA Streptococcus pneumoniae Rx1

44.471

100

0.452
  cinA Streptococcus pneumoniae R6

44.471

100

0.452
  cinA Streptococcus pneumoniae D39

44.235

100

0.45
  cinA Streptococcus mutans UA159

48.148

90.431

0.435
  cinA Streptococcus suis isolate S10

40.212

90.431

0.364

Multiple sequence alignment