Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY09_RS12360 Genome accession   NZ_CP152020
Coordinates   2482969..2484033 (-) Length   354 a.a.
NCBI ID   WP_277347068.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-4046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2477969..2489033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY09_RS12345 (MKY09_12345) - 2479605..2479871 (-) 267 WP_169358657.1 stage V sporulation protein S -
  MKY09_RS12350 (MKY09_12350) - 2479958..2480755 (-) 798 WP_169358656.1 TIGR00282 family metallophosphoesterase -
  MKY09_RS12355 (MKY09_12355) rny 2480834..2482393 (-) 1560 WP_169358655.1 ribonuclease Y -
  MKY09_RS12360 (MKY09_12360) recA 2482969..2484033 (-) 1065 WP_277347068.1 recombinase RecA Machinery gene
  MKY09_RS12365 (MKY09_12365) cinA 2484206..2485462 (-) 1257 WP_342566782.1 competence/damage-inducible protein A Machinery gene
  MKY09_RS12370 (MKY09_12370) pgsA 2485478..2486056 (-) 579 WP_169358719.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY09_RS12375 (MKY09_12375) - 2486113..2486967 (-) 855 WP_298473337.1 RodZ domain-containing protein -
  MKY09_RS12380 (MKY09_12380) - 2486985..2487791 (-) 807 WP_169358718.1 YmfK family protein -
  MKY09_RS12385 (MKY09_12385) - 2487911..2488642 (-) 732 WP_342566783.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38222.58 Da        Isoelectric Point: 4.7457

>NTDB_id=985246 MKY09_RS12360 WP_277347068.1 2482969..2484033(-) (recA) [Psychrobacillus sp. FSL K6-4046]
MANDRKAALEMALKQIEKQFGKGSVMKLGEKTDREISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIA
EIQKTGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEIIVIDSVAALVPKAEIEGEMGD
SHIGLQARLMSQALRKLSGVINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIMGNK
TKIKVVKNKVAPPFKTAEVDIMYGEGISQEGEIVDIGSEYDIIQKSGSWYAYNEERIGQGRENAKQFLKENPAIKEEVAL
KIRQSLGMSAGALVIAAHEPEDEDGEFELLLEDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=985246 MKY09_RS12360 WP_277347068.1 2482969..2484033(-) (recA) [Psychrobacillus sp. FSL K6-4046]
TTGGCTAATGATCGTAAAGCAGCGTTAGAAATGGCTTTAAAACAAATAGAGAAACAATTTGGTAAAGGGTCCGTAATGAA
ATTAGGAGAGAAAACAGACCGTGAAATCTCTACCTCTTCAAGTGGTTCCCTAGCTCTTGATGCAGCACTTGGAATAGGCG
GATATCCAAGAGGTCGTATTATTGAAATTTATGGCCCAGAGAGCTCAGGTAAAACAACTGTAGCGCTTCACGCTATTGCA
GAAATACAAAAAACAGGTGGGCAAGCGGCATTTATTGATGCAGAGCATGCGTTGGACCCTGTATATGCACAAAAACTAGG
CGTTAACATAGATGAATTATTATTATCTCAACCCGACACTGGAGAGCAAGCCCTTGAAATCGCAGAAGCTCTAGTCCGCA
GTGGTGCGGTTGAAATCATTGTTATCGACTCTGTTGCAGCATTAGTACCAAAAGCGGAGATAGAAGGAGAAATGGGAGAC
TCTCATATTGGTCTTCAAGCTCGCTTAATGTCTCAAGCATTACGTAAGCTATCAGGAGTTATTAACAAATCTAACACTAT
AGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGAGTAATGTTTGGTAACCCGGAGGTAACGCCTGGTGGTCGTGCAC
TTAAATTCTACAGCTCTGTCCGCTTAGAAGTAAGACGTGCTGAAGCTATTAAACAAGGTACAGACATTATGGGTAACAAA
ACGAAAATTAAAGTAGTAAAAAACAAAGTTGCTCCACCATTTAAAACTGCAGAAGTAGATATTATGTACGGAGAAGGAAT
CTCTCAAGAAGGAGAAATCGTTGATATAGGTTCTGAATACGATATTATCCAAAAAAGTGGTTCTTGGTATGCTTACAATG
AAGAACGTATTGGCCAAGGGCGAGAAAACGCTAAGCAATTCTTGAAAGAAAACCCTGCTATTAAAGAAGAAGTGGCATTA
AAAATCCGTCAATCTCTAGGTATGTCTGCTGGTGCACTTGTTATTGCAGCGCATGAGCCAGAGGACGAAGATGGCGAGTT
CGAGCTACTTTTAGAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.735

93.785

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

72.599

100

0.726
  recA Streptococcus pyogenes NZ131

65.527

99.153

0.65
  recA Streptococcus mutans UA159

68.373

93.785

0.641
  recA Streptococcus pneumoniae Rx1

67.771

93.785

0.636
  recA Streptococcus mitis NCTC 12261

67.771

93.785

0.636
  recA Streptococcus pneumoniae D39

67.771

93.785

0.636
  recA Streptococcus pneumoniae R6

67.771

93.785

0.636
  recA Streptococcus pneumoniae TIGR4

67.771

93.785

0.636
  recA Streptococcus mitis SK321

67.47

93.785

0.633
  recA Lactococcus lactis subsp. cremoris KW2

67.477

92.938

0.627
  recA Acinetobacter baumannii D1279779

61.932

99.435

0.616
  recA Vibrio cholerae strain A1552

61.671

98.023

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.671

98.023

0.605
  recA Neisseria gonorrhoeae MS11

65.432

91.525

0.599
  recA Neisseria gonorrhoeae MS11

65.432

91.525

0.599
  recA Neisseria gonorrhoeae strain FA1090

65.432

91.525

0.599
  recA Glaesserella parasuis strain SC1401

60.286

98.87

0.596
  recA Acinetobacter baylyi ADP1

61.516

96.893

0.596
  recA Ralstonia pseudosolanacearum GMI1000

64.329

92.655

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.942

98.023

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

93.22

0.582
  recA Pseudomonas stutzeri DSM 10701

62.883

92.09

0.579
  recA Helicobacter pylori strain NCTC11637

62.769

91.808

0.576
  recA Helicobacter pylori 26695

62.462

91.808

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.635

89.831

0.554

Multiple sequence alignment