Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY09_RS12365 Genome accession   NZ_CP152020
Coordinates   2484206..2485462 (-) Length   418 a.a.
NCBI ID   WP_342566782.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-4046     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2479206..2490462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY09_RS12345 (MKY09_12345) - 2479605..2479871 (-) 267 WP_169358657.1 stage V sporulation protein S -
  MKY09_RS12350 (MKY09_12350) - 2479958..2480755 (-) 798 WP_169358656.1 TIGR00282 family metallophosphoesterase -
  MKY09_RS12355 (MKY09_12355) rny 2480834..2482393 (-) 1560 WP_169358655.1 ribonuclease Y -
  MKY09_RS12360 (MKY09_12360) recA 2482969..2484033 (-) 1065 WP_277347068.1 recombinase RecA Machinery gene
  MKY09_RS12365 (MKY09_12365) cinA 2484206..2485462 (-) 1257 WP_342566782.1 competence/damage-inducible protein A Machinery gene
  MKY09_RS12370 (MKY09_12370) pgsA 2485478..2486056 (-) 579 WP_169358719.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY09_RS12375 (MKY09_12375) - 2486113..2486967 (-) 855 WP_298473337.1 RodZ domain-containing protein -
  MKY09_RS12380 (MKY09_12380) - 2486985..2487791 (-) 807 WP_169358718.1 YmfK family protein -
  MKY09_RS12385 (MKY09_12385) - 2487911..2488642 (-) 732 WP_342566783.1 SDR family oxidoreductase -
  MKY09_RS12390 (MKY09_12390) - 2488635..2489939 (-) 1305 WP_342566784.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46065.86 Da        Isoelectric Point: 5.1256

>NTDB_id=985247 MKY09_RS12365 WP_342566782.1 2484206..2485462(-) (cinA) [Psychrobacillus sp. FSL K6-4046]
MKAEIIAVGSELLLGQISNTNARYISSQLAELGIDVYYHTVVGDNPNRLLEAIKIAENRADLIIFSGGLGPTKDDLTKET
ISKHLNKNLVLDDHAIIYIEDFFKRAGKVMTENNKKQALVLDGCTVLENKHGMAPGMLLSTEKHTYMLLPGPPKELEPMF
QFEAKPLLPKLLYKENVIMSHVIRFYGIGEAELENEVQDLLDNQTNPTLAPLASDGEVTLRLTAKADTEEEAWKRIEKLQ
AEILNRVGKYVYGYNNESLASKLRDILIDNELTISAAESMTAGLFQSELAAVPGMGVALVGGIITYTEEVKINQLSVKRE
TIDEHSVVSSQVAEEMASRVKEKFETTIGVGITGAAGPDGHGDQPAGTVWIGIAYGDVAPISYKLNLSGMRNTNRLRTVK
FTIHYLIRLLREEGLSKI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=985247 MKY09_RS12365 WP_342566782.1 2484206..2485462(-) (cinA) [Psychrobacillus sp. FSL K6-4046]
ATGAAAGCAGAGATTATTGCGGTAGGATCAGAATTATTGTTAGGGCAAATTTCCAATACGAACGCAAGATATATATCCTC
CCAGCTGGCAGAGTTAGGGATCGATGTGTATTACCACACAGTAGTTGGAGACAATCCTAATCGTTTGTTAGAAGCCATAA
AAATCGCAGAAAATCGAGCTGACCTCATTATTTTTTCAGGAGGTTTAGGACCTACTAAAGACGATCTTACAAAAGAAACA
ATTTCTAAACACCTTAACAAAAATCTTGTATTAGATGATCATGCAATCATTTATATTGAGGATTTCTTTAAAAGAGCTGG
AAAAGTAATGACGGAGAACAATAAAAAACAAGCATTAGTTTTAGACGGCTGTACTGTCCTTGAAAACAAGCATGGGATGG
CTCCGGGGATGCTGCTTTCCACAGAGAAACATACATATATGTTATTGCCTGGCCCTCCAAAAGAATTAGAGCCGATGTTC
CAATTTGAGGCTAAGCCGCTGTTACCTAAACTGCTTTACAAAGAAAATGTAATTATGTCCCATGTCATTCGCTTTTATGG
TATTGGCGAAGCAGAGTTGGAGAATGAGGTCCAGGATTTATTGGACAATCAAACAAATCCGACCCTTGCGCCGCTAGCTT
CTGACGGCGAGGTAACCTTACGACTTACTGCGAAAGCAGATACGGAGGAAGAAGCTTGGAAAAGGATTGAAAAGCTACAA
GCTGAAATCTTAAACCGCGTGGGCAAATATGTATATGGCTATAATAACGAATCGTTAGCCTCCAAGCTTAGAGATATTCT
AATTGACAATGAGCTAACAATTTCTGCTGCAGAAAGTATGACTGCTGGACTTTTTCAATCGGAGTTAGCGGCAGTCCCAG
GAATGGGCGTAGCACTTGTAGGTGGCATTATCACCTATACAGAAGAAGTGAAAATCAATCAGCTTAGTGTTAAGAGAGAA
ACGATTGATGAACATAGTGTCGTTTCTAGTCAGGTTGCAGAAGAAATGGCTAGTCGAGTCAAAGAAAAGTTTGAAACAAC
GATAGGTGTAGGTATTACTGGAGCAGCTGGGCCAGATGGACACGGAGATCAACCGGCAGGAACGGTGTGGATTGGAATAG
CGTATGGAGACGTTGCCCCAATTTCTTATAAATTGAATCTATCTGGTATGAGAAACACAAATCGTTTAAGAACAGTTAAG
TTTACTATTCATTATTTGATTCGACTTTTAAGAGAAGAAGGATTATCGAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.184

98.565

0.514
  cinA Streptococcus mitis NCTC 12261

44

100

0.447
  cinA Streptococcus pneumoniae TIGR4

44

100

0.447
  cinA Streptococcus pneumoniae Rx1

43.765

100

0.445
  cinA Streptococcus pneumoniae R6

43.765

100

0.445
  cinA Streptococcus pneumoniae D39

43.529

100

0.443
  cinA Streptococcus mitis SK321

46.997

91.627

0.431
  cinA Streptococcus mutans UA159

47.09

90.431

0.426

Multiple sequence alignment