Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY34_RS18240 Genome accession   NZ_CP152019
Coordinates   3650289..3651353 (-) Length   354 a.a.
NCBI ID   WP_342512533.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL K6-1522     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3645289..3656353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY34_RS18225 (MKY34_18225) - 3647212..3647490 (-) 279 WP_342512530.1 stage V sporulation protein S -
  MKY34_RS18230 (MKY34_18230) - 3647577..3648374 (-) 798 WP_342512531.1 TIGR00282 family metallophosphoesterase -
  MKY34_RS18235 (MKY34_18235) rny 3648436..3649995 (-) 1560 WP_342512532.1 ribonuclease Y -
  MKY34_RS18240 (MKY34_18240) recA 3650289..3651353 (-) 1065 WP_342512533.1 recombinase RecA Machinery gene
  MKY34_RS18245 (MKY34_18245) cinA 3651529..3652782 (-) 1254 WP_342512534.1 competence/damage-inducible protein A Machinery gene
  MKY34_RS18250 (MKY34_18250) pgsA 3652797..3653375 (-) 579 WP_342512535.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY34_RS18255 (MKY34_18255) - 3653423..3654334 (-) 912 WP_342512536.1 RodZ domain-containing protein -
  MKY34_RS18260 (MKY34_18260) - 3654351..3655148 (-) 798 WP_342512537.1 DUF3388 domain-containing protein -
  MKY34_RS18265 (MKY34_18265) - 3655352..3656083 (-) 732 WP_342512538.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38266.30 Da        Isoelectric Point: 4.6985

>NTDB_id=985212 MKY34_RS18240 WP_342512533.1 3650289..3651353(-) (recA) [Sporosarcina sp. FSL K6-1522]
MSDRKAALDMALKQIEKQFGKGSVMKLGEKTDREIETSSTGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTLAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLDVRRGEAIKQGNDIVGNKT
RIRVVKNKVAPPFRTAEVDIMYGEGISREGEIVDLGVEVEVVQKSGSWYSYEGERLGQGRENSKQFLKENPAIRLEIANK
IRDSYGLASANYVIAGHDTDDEEEELELLLDEKE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=985212 MKY34_RS18240 WP_342512533.1 3650289..3651353(-) (recA) [Sporosarcina sp. FSL K6-1522]
TTGAGCGATCGTAAAGCGGCATTAGATATGGCTTTAAAACAAATTGAAAAGCAATTCGGTAAAGGGTCTGTTATGAAACT
AGGGGAAAAAACGGACAGGGAAATTGAAACCTCATCAACAGGGTCATTAGCACTTGATGCTGCACTTGGAGTAGGCGGCT
ATCCACGTGGACGCATTATCGAAATTTATGGACCTGAAAGCTCAGGTAAAACGACAGTTGCTCTTCATGCCATTGCGGAA
GTTCAAGCATCTGGTGGGCAAGCTGCATTTATCGATGCTGAGCATGCGCTCGATCCGGTTTATGCACAAAAACTTGGTGT
TAATATTGATGAGTTATTGCTGTCTCAACCAGATACAGGGGAGCAAGCACTGGAAATTGCTGAAGCGCTTGTACGCAGTG
GGGCTGTTGACATTCTTGTCATTGACTCCGTTGCTGCACTTGTACCAAAAGCGGAAATTGAAGGGGAGATGGGTGATTCA
CACGTTGGGTTGCAAGCTCGTCTAATGTCACAAGCATTGCGTAAACTTTCAGGTGCTATCAATAAATCCAACACACTTGC
AGTCTTCATTAACCAAATCCGTGAAAAAGTTGGCGTTATGTTTGGAAACCCTGAAGTAACACCGGGTGGTCGCGCGTTGA
AATTCTATTCTTCTGTACGACTAGATGTACGACGTGGTGAAGCGATTAAACAAGGCAATGATATTGTTGGGAACAAAACG
CGTATTCGTGTTGTGAAAAATAAGGTTGCGCCACCATTCCGTACGGCGGAAGTAGATATTATGTACGGAGAAGGAATTTC
TCGTGAAGGTGAAATTGTCGACCTTGGCGTAGAAGTAGAAGTCGTGCAAAAAAGTGGTTCTTGGTATTCCTATGAGGGTG
AACGACTTGGACAAGGACGTGAGAATTCTAAGCAATTCTTGAAAGAGAATCCGGCGATCCGTTTAGAAATCGCTAATAAA
ATTCGTGATTCATATGGCTTGGCAAGTGCGAACTATGTCATTGCAGGTCACGACACAGATGATGAAGAGGAAGAATTAGA
ATTATTGCTTGACGAAAAAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.933

92.373

0.794
  recA Latilactobacillus sakei subsp. sakei 23K

74.233

92.09

0.684
  recA Streptococcus mutans UA159

64.507

100

0.647
  recA Streptococcus pyogenes NZ131

64.368

98.305

0.633
  recA Streptococcus pneumoniae D39

63.506

98.305

0.624
  recA Streptococcus pneumoniae TIGR4

63.506

98.305

0.624
  recA Streptococcus pneumoniae Rx1

63.506

98.305

0.624
  recA Streptococcus pneumoniae R6

63.506

98.305

0.624
  recA Neisseria gonorrhoeae MS11

67.901

91.525

0.621
  recA Neisseria gonorrhoeae MS11

67.901

91.525

0.621
  recA Neisseria gonorrhoeae strain FA1090

67.901

91.525

0.621
  recA Streptococcus mitis NCTC 12261

65.758

93.22

0.613
  recA Acinetobacter baylyi ADP1

62.536

98.023

0.613
  recA Streptococcus mitis SK321

65.455

93.22

0.61
  recA Ralstonia pseudosolanacearum GMI1000

65.854

92.655

0.61
  recA Lactococcus lactis subsp. cremoris KW2

65.152

93.22

0.607
  recA Acinetobacter baumannii D1279779

61.318

98.588

0.605
  recA Pseudomonas stutzeri DSM 10701

64.742

92.938

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

96.893

0.599
  recA Vibrio cholerae strain A1552

66.044

90.678

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

90.678

0.599
  recA Glaesserella parasuis strain SC1401

62.17

96.328

0.599
  recA Helicobacter pylori strain NCTC11637

62.769

91.808

0.576
  recA Helicobacter pylori 26695

62.462

91.808

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

92.373

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

90.395

0.548

Multiple sequence alignment