Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY34_RS18245 Genome accession   NZ_CP152019
Coordinates   3651529..3652782 (-) Length   417 a.a.
NCBI ID   WP_342512534.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL K6-1522     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3646529..3657782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY34_RS18225 (MKY34_18225) - 3647212..3647490 (-) 279 WP_342512530.1 stage V sporulation protein S -
  MKY34_RS18230 (MKY34_18230) - 3647577..3648374 (-) 798 WP_342512531.1 TIGR00282 family metallophosphoesterase -
  MKY34_RS18235 (MKY34_18235) rny 3648436..3649995 (-) 1560 WP_342512532.1 ribonuclease Y -
  MKY34_RS18240 (MKY34_18240) recA 3650289..3651353 (-) 1065 WP_342512533.1 recombinase RecA Machinery gene
  MKY34_RS18245 (MKY34_18245) cinA 3651529..3652782 (-) 1254 WP_342512534.1 competence/damage-inducible protein A Machinery gene
  MKY34_RS18250 (MKY34_18250) pgsA 3652797..3653375 (-) 579 WP_342512535.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY34_RS18255 (MKY34_18255) - 3653423..3654334 (-) 912 WP_342512536.1 RodZ domain-containing protein -
  MKY34_RS18260 (MKY34_18260) - 3654351..3655148 (-) 798 WP_342512537.1 DUF3388 domain-containing protein -
  MKY34_RS18265 (MKY34_18265) - 3655352..3656083 (-) 732 WP_342512538.1 SDR family oxidoreductase -
  MKY34_RS18270 (MKY34_18270) - 3656083..3657381 (-) 1299 WP_342512539.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44717.03 Da        Isoelectric Point: 4.7471

>NTDB_id=985213 MKY34_RS18245 WP_342512534.1 3651529..3652782(-) (cinA) [Sporosarcina sp. FSL K6-1522]
MRAEIIAVGSELLLGQIMNTNAKFISSRLAEIGVDVHYQTVVGDNSNRLEDVIDIAAKRADVLIFTGGLGPTKDDMTKET
IAKHVGCALVSDDEALRYIQSYFERVGRTMTDNNKKQALVLEGATVLANRKGMAPGMAVEKEGIHYILLPGPPHEMEPMF
ADEAIPYLLGLTGKHEVITSRVLKFYGIGEAELEDRIQAILEKQTNPTVAPLASPDAVTLRLTAKAQTADEALAWIEPVE
EEIRSIVGDYIYGIDDDTLSSKVAELLGRNGWTLAAAESLTAGLFMAELAGEPGISASLEGGVVVYNNDVKTEQLGIDAA
LLAEYGVVSAQCAAALAVNVKRKFGADIGVGLTGAAGPDPHDGKPSGTVWIGIASVDAEPETYKLVLSSSRNANRLRAAR
FALYYLIKHLRKKEGQN

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=985213 MKY34_RS18245 WP_342512534.1 3651529..3652782(-) (cinA) [Sporosarcina sp. FSL K6-1522]
ATGAGGGCTGAAATTATTGCGGTTGGTTCAGAGCTGTTGCTTGGACAAATTATGAATACGAATGCGAAATTCATTTCATC
GAGATTGGCTGAAATCGGCGTTGATGTGCATTACCAGACGGTGGTCGGTGATAATTCAAATCGTTTAGAGGACGTTATTG
ACATTGCGGCTAAACGTGCGGATGTACTCATCTTTACGGGGGGGCTTGGGCCGACAAAAGATGATATGACGAAAGAAACA
ATTGCGAAGCATGTGGGCTGTGCGCTAGTGAGTGATGATGAAGCGCTGCGGTATATTCAAAGCTATTTTGAACGTGTTGG
GCGTACCATGACTGACAATAATAAAAAGCAAGCACTTGTGCTGGAAGGTGCGACAGTGCTGGCAAATCGCAAAGGTATGG
CACCTGGGATGGCTGTTGAAAAAGAAGGCATCCATTATATTTTATTGCCAGGGCCACCGCATGAAATGGAGCCGATGTTT
GCCGACGAAGCGATTCCTTATTTGCTCGGCTTAACGGGGAAACATGAAGTGATTACCTCACGTGTGTTAAAGTTTTATGG
AATTGGCGAAGCAGAGCTCGAAGATCGGATTCAGGCGATTTTGGAAAAGCAGACGAATCCGACCGTCGCTCCGCTTGCTA
GCCCAGATGCGGTGACGTTACGTTTAACTGCAAAAGCACAGACAGCCGATGAGGCACTTGCATGGATTGAGCCTGTAGAA
GAAGAGATTCGTTCGATTGTTGGGGATTATATTTACGGCATAGATGACGATACATTATCGTCAAAGGTAGCGGAGCTATT
AGGTCGAAATGGTTGGACGCTGGCGGCTGCGGAAAGTTTAACGGCGGGTCTTTTCATGGCTGAGTTAGCGGGAGAGCCGG
GCATTAGCGCCTCGCTCGAAGGTGGCGTAGTGGTGTATAACAACGATGTGAAGACGGAGCAGTTAGGCATCGATGCGGCC
TTATTAGCCGAGTATGGCGTCGTGAGTGCACAATGTGCGGCAGCGCTTGCTGTGAATGTTAAACGGAAGTTTGGCGCAGA
TATTGGCGTCGGTTTGACAGGGGCAGCAGGTCCCGACCCGCATGATGGCAAGCCGTCGGGAACGGTTTGGATAGGGATTG
CCTCCGTAGATGCGGAACCGGAAACGTATAAATTGGTTTTATCGAGCTCACGGAATGCGAATCGTCTTCGAGCTGCTCGA
TTTGCATTGTATTATCTCATCAAGCACCTTCGTAAAAAAGAGGGCCAAAATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.971

98.801

0.504
  cinA Streptococcus pneumoniae TIGR4

43.885

100

0.439
  cinA Streptococcus pneumoniae Rx1

43.885

100

0.439
  cinA Streptococcus pneumoniae R6

43.885

100

0.439
  cinA Streptococcus pneumoniae D39

43.645

100

0.436
  cinA Streptococcus mitis SK321

45.692

91.847

0.42
  cinA Streptococcus mitis NCTC 12261

45.431

91.847

0.417
  cinA Streptococcus mutans UA159

43.799

90.887

0.398

Multiple sequence alignment