Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKZ10_RS08130 Genome accession   NZ_CP152017
Coordinates   1630862..1631926 (+) Length   354 a.a.
NCBI ID   WP_342509595.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL K6-2383     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625862..1636926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ10_RS08105 (MKZ10_08105) - 1626134..1626871 (+) 738 WP_342509586.1 SDR family oxidoreductase -
  MKZ10_RS08110 (MKZ10_08110) - 1627056..1627853 (+) 798 WP_342509588.1 DUF3388 domain-containing protein -
  MKZ10_RS08115 (MKZ10_08115) - 1627870..1628751 (+) 882 WP_342509590.1 RodZ domain-containing protein -
  MKZ10_RS08120 (MKZ10_08120) pgsA 1628799..1629377 (+) 579 WP_342509591.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKZ10_RS08125 (MKZ10_08125) cinA 1629392..1630633 (+) 1242 WP_342509593.1 competence/damage-inducible protein A Machinery gene
  MKZ10_RS08130 (MKZ10_08130) recA 1630862..1631926 (+) 1065 WP_342509595.1 recombinase RecA Machinery gene
  MKZ10_RS08135 (MKZ10_08135) rny 1632142..1633701 (+) 1560 WP_342509597.1 ribonuclease Y -
  MKZ10_RS08140 (MKZ10_08140) - 1633766..1634563 (+) 798 WP_342509599.1 TIGR00282 family metallophosphoesterase -
  MKZ10_RS08145 (MKZ10_08145) - 1634650..1634916 (+) 267 WP_203246292.1 stage V sporulation protein S -
  MKZ10_RS08150 (MKZ10_08150) miaB 1635103..1636635 (+) 1533 WP_342509601.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38223.33 Da        Isoelectric Point: 4.8647

>NTDB_id=985119 MKZ10_RS08130 WP_342509595.1 1630862..1631926(+) (recA) [Sporosarcina sp. FSL K6-2383]
MSDRKAALDMALKQIEKQFGKGSVMKLGERTNLEVSTSSSGSLALDAALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQANGGTAAFIDAEHALDPIYARKLGVNIDELILSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HIGLQARLMSQALRKLSGAINKSNTLAVFINQIREKVGVMFGSPEVTPGGRALKFYSSVRIDVRRGEAIKQGNDIVGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISREGEIVDLGVELEIVQKSGSWFSYEGERLGQGRENSKQFLKENPAIRAEISNK
IRESYGLANANYVIAGHDEDDEDEELELLLEEKK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=985119 MKZ10_RS08130 WP_342509595.1 1630862..1631926(+) (recA) [Sporosarcina sp. FSL K6-2383]
TTGAGTGATCGTAAAGCCGCTTTAGACATGGCGTTAAAACAAATTGAAAAGCAATTCGGTAAAGGGTCTGTTATGAAACT
TGGCGAAAGGACTAACCTAGAAGTTTCAACATCTTCATCAGGGTCTCTTGCACTCGATGCAGCACTTGGTGTGGGCGGAT
ATCCACGAGGTCGTGTTATCGAAATCTATGGACCTGAGAGTTCTGGTAAAACGACAGTTTCTCTCCATGCGATTGCTGAA
GTACAAGCAAATGGTGGAACAGCTGCATTTATAGACGCAGAGCATGCGCTGGACCCAATTTATGCACGTAAATTAGGTGT
GAATATTGATGAGTTAATTCTTTCACAACCAGATACAGGTGAGCAAGCACTCGAAATTGCTGAAGCGCTTGTCCGAAGTG
GTGCTGTTGATATTATTGTTGTCGATTCTGTTGCAGCACTCGTGCCAAAAGCAGAAATTGAAGGAGAGATGGGTGACTCA
CACATTGGGTTGCAAGCTCGTCTTATGTCACAAGCTCTACGTAAACTTTCTGGTGCTATTAATAAGTCTAATACACTAGC
CGTATTCATTAACCAGATTCGTGAAAAAGTAGGCGTAATGTTTGGAAGTCCTGAAGTAACACCTGGTGGACGTGCACTAA
AATTCTATTCTTCTGTGCGAATAGATGTACGACGAGGTGAAGCGATTAAACAGGGCAACGATATTGTTGGAAACAAGACA
CGCATTAAAGTTGTAAAAAATAAGGTAGCACCACCATTCCGTACAGCAGAAGTCGATATTATGTATGGTGAAGGGATTTC
TAGAGAAGGTGAAATCGTTGATCTTGGTGTTGAACTCGAAATTGTTCAGAAGAGCGGATCATGGTTTTCATATGAAGGAG
AACGACTTGGGCAAGGACGCGAGAATTCGAAACAGTTTTTGAAGGAAAATCCTGCGATTCGTGCAGAAATCTCCAATAAA
ATTCGTGAATCCTATGGCCTTGCGAATGCAAACTATGTTATCGCAGGTCATGACGAAGATGATGAAGATGAAGAACTAGA
ATTACTTCTCGAAGAAAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.883

94.068

0.78
  recA Latilactobacillus sakei subsp. sakei 23K

69.405

99.718

0.692
  recA Neisseria gonorrhoeae MS11

67.372

93.503

0.63
  recA Neisseria gonorrhoeae MS11

67.372

93.503

0.63
  recA Neisseria gonorrhoeae strain FA1090

67.372

93.503

0.63
  recA Streptococcus mutans UA159

67.781

92.938

0.63
  recA Streptococcus pneumoniae Rx1

63.689

98.023

0.624
  recA Streptococcus pneumoniae R6

63.689

98.023

0.624
  recA Streptococcus pneumoniae TIGR4

63.689

98.023

0.624
  recA Streptococcus pneumoniae D39

63.689

98.023

0.624
  recA Streptococcus pyogenes NZ131

67.378

92.655

0.624
  recA Acinetobacter baylyi ADP1

63.401

98.023

0.621
  recA Streptococcus mitis NCTC 12261

65.758

93.22

0.613
  recA Streptococcus mitis SK321

65.758

93.22

0.613
  recA Lactococcus lactis subsp. cremoris KW2

65.758

93.22

0.613
  recA Acinetobacter baumannii D1279779

62.178

98.588

0.613
  recA Ralstonia pseudosolanacearum GMI1000

69.01

88.418

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

97.175

0.607
  recA Pseudomonas stutzeri DSM 10701

61.919

97.175

0.602
  recA Glaesserella parasuis strain SC1401

62.463

96.328

0.602
  recA Vibrio cholerae strain A1552

65.421

90.678

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

90.678

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.938

0.593
  recA Helicobacter pylori strain NCTC11637

63.692

91.808

0.585
  recA Helicobacter pylori 26695

63.385

91.808

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

90.395

0.545

Multiple sequence alignment