Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKZ10_RS08125 Genome accession   NZ_CP152017
Coordinates   1629392..1630633 (+) Length   413 a.a.
NCBI ID   WP_342509593.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL K6-2383     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1624392..1635633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ10_RS08100 (MKZ10_08100) - 1624839..1626137 (+) 1299 WP_342509584.1 pitrilysin family protein -
  MKZ10_RS08105 (MKZ10_08105) - 1626134..1626871 (+) 738 WP_342509586.1 SDR family oxidoreductase -
  MKZ10_RS08110 (MKZ10_08110) - 1627056..1627853 (+) 798 WP_342509588.1 DUF3388 domain-containing protein -
  MKZ10_RS08115 (MKZ10_08115) - 1627870..1628751 (+) 882 WP_342509590.1 RodZ domain-containing protein -
  MKZ10_RS08120 (MKZ10_08120) pgsA 1628799..1629377 (+) 579 WP_342509591.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKZ10_RS08125 (MKZ10_08125) cinA 1629392..1630633 (+) 1242 WP_342509593.1 competence/damage-inducible protein A Machinery gene
  MKZ10_RS08130 (MKZ10_08130) recA 1630862..1631926 (+) 1065 WP_342509595.1 recombinase RecA Machinery gene
  MKZ10_RS08135 (MKZ10_08135) rny 1632142..1633701 (+) 1560 WP_342509597.1 ribonuclease Y -
  MKZ10_RS08140 (MKZ10_08140) - 1633766..1634563 (+) 798 WP_342509599.1 TIGR00282 family metallophosphoesterase -
  MKZ10_RS08145 (MKZ10_08145) - 1634650..1634916 (+) 267 WP_203246292.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44800.48 Da        Isoelectric Point: 4.8494

>NTDB_id=985118 MKZ10_RS08125 WP_342509593.1 1629392..1630633(+) (cinA) [Sporosarcina sp. FSL K6-2383]
MKAEIIAVGSELLLGQITNTNAKFISSKLAGIGIDVYYQTVVGDNPARLDEVIDIARKRADILIFTGGLGPTKDDMTKET
ISKHIDTTLVSDKEALRYIQQYFERSGRVMTDNNKKQALVFKGATVLANRKGMAPGMAVEHEGVRYILLPGPPHEMEPMF
RDEVIPYLLGATGNKDVITSRVLKFYGIGEAELEFRIQSILEKQTNPTIAPLATADAVTLRLTAKGRSADEALQLITPVE
AEIRAVVGEFIFGIDDETLSSKAAKLLIQNGWTIAAAESLTAGLFMAELANEPGIGSSLAGGMVVYNEQMKIAQLDIDHT
LLDEFGIVSEECAAALAVNIQRKFGTDIGVGLTGAAGPSPHDGEPVGTVWIGICFKEEEPVTYKLLLSGSRNANRLRAAR
FALYYLIQQLDEK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=985118 MKZ10_RS08125 WP_342509593.1 1629392..1630633(+) (cinA) [Sporosarcina sp. FSL K6-2383]
ATGAAAGCTGAAATTATAGCTGTTGGCTCGGAGCTATTGCTCGGTCAAATTACGAATACAAACGCTAAATTCATATCATC
CAAACTTGCGGGAATTGGTATCGATGTTTATTATCAAACGGTTGTTGGTGACAATCCTGCTCGATTAGATGAAGTCATTG
ATATTGCTAGGAAACGTGCGGATATATTAATCTTTACAGGTGGGCTTGGGCCAACGAAGGATGATATGACGAAAGAGACG
ATCTCTAAGCATATTGACACGACATTAGTAAGCGATAAGGAAGCACTTCGCTATATTCAACAGTATTTTGAACGAAGTGG
GCGTGTGATGACGGATAATAATAAAAAGCAAGCACTTGTTTTTAAAGGGGCTACTGTGTTAGCAAACCGTAAGGGGATGG
CGCCTGGAATGGCGGTAGAGCATGAGGGTGTGCGCTATATTTTATTGCCTGGTCCACCACATGAAATGGAACCGATGTTC
AGGGATGAAGTGATTCCTTATTTGTTGGGGGCAACCGGAAATAAGGACGTTATTACGTCTCGTGTTCTGAAGTTTTACGG
GATTGGAGAGGCAGAGCTTGAATTTCGTATCCAATCCATTTTGGAGAAACAGACCAATCCAACAATCGCCCCCTTGGCGA
CAGCTGATGCGGTGACACTACGCTTAACTGCAAAAGGACGTTCAGCTGATGAAGCCTTACAGCTAATCACACCAGTGGAG
GCGGAAATTCGAGCGGTTGTCGGAGAATTCATCTTCGGGATAGATGATGAAACACTATCATCTAAAGCCGCGAAATTACT
AATTCAAAACGGCTGGACGATTGCGGCAGCGGAAAGTTTAACAGCTGGTTTGTTCATGGCGGAGTTGGCTAATGAACCAG
GGATTGGCTCATCACTTGCAGGCGGGATGGTCGTTTACAATGAACAGATGAAAATCGCTCAACTTGACATCGATCATACA
TTGCTCGATGAATTTGGCATTGTGAGTGAAGAATGTGCAGCAGCACTAGCGGTGAACATCCAGCGTAAGTTCGGAACGGA
TATCGGTGTGGGTCTTACAGGTGCCGCAGGTCCTTCTCCGCATGACGGAGAGCCGGTCGGGACCGTTTGGATTGGCATTT
GCTTCAAAGAAGAAGAGCCGGTGACCTATAAATTGTTATTATCAGGCTCTAGGAACGCCAATCGTCTAAGAGCAGCAAGA
TTTGCACTCTATTATCTCATTCAACAGCTAGATGAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50

99.758

0.499
  cinA Streptococcus mitis SK321

42.823

100

0.433
  cinA Streptococcus mitis NCTC 12261

42.584

100

0.431
  cinA Streptococcus pneumoniae TIGR4

45.692

92.736

0.424
  cinA Streptococcus pneumoniae R6

45.431

92.736

0.421
  cinA Streptococcus pneumoniae Rx1

45.431

92.736

0.421
  cinA Streptococcus pneumoniae D39

45.17

92.736

0.419
  cinA Streptococcus mutans UA159

39.952

100

0.4

Multiple sequence alignment