Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY77_RS11105 Genome accession   NZ_CP152003
Coordinates   2197332..2198372 (+) Length   346 a.a.
NCBI ID   WP_237662144.1    Uniprot ID   -
Organism   Sutcliffiella sp. FSL R7-0096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192332..2203372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY77_RS11080 (MKY77_11080) - 2192388..2192645 (+) 258 WP_339145867.1 DUF3243 domain-containing protein -
  MKY77_RS11085 (MKY77_11085) - 2192925..2193716 (+) 792 WP_339145868.1 DUF3388 domain-containing protein -
  MKY77_RS11090 (MKY77_11090) - 2193739..2194626 (+) 888 WP_339145869.1 RodZ domain-containing protein -
  MKY77_RS11095 (MKY77_11095) pgsA 2194730..2195311 (+) 582 WP_339149790.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY77_RS11100 (MKY77_11100) cinA 2195546..2196790 (+) 1245 WP_339145870.1 competence/damage-inducible protein A Machinery gene
  MKY77_RS11105 (MKY77_11105) recA 2197332..2198372 (+) 1041 WP_237662144.1 recombinase RecA Machinery gene
  MKY77_RS11110 (MKY77_11110) rny 2198675..2200237 (+) 1563 WP_339149791.1 ribonuclease Y -
  MKY77_RS11115 (MKY77_11115) - 2200550..2201344 (+) 795 WP_339149792.1 TIGR00282 family metallophosphoesterase -
  MKY77_RS11120 (MKY77_11120) spoVS 2201492..2201752 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  MKY77_RS11125 (MKY77_11125) - 2201914..2202837 (+) 924 WP_339145871.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37783.98 Da        Isoelectric Point: 5.2085

>NTDB_id=984409 MKY77_RS11105 WP_237662144.1 2197332..2198372(+) (recA) [Sutcliffiella sp. FSL R7-0096]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQTERKISTIPSGSLALDVALGAGGYPRGRVVEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGNKT
KIKVVKNKIAPPFKVAEVDIMYGEGISREGEVIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENKDVLKEIHQQ
IRDHHGLDKEINAPAEEEMDQEELDF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=984409 MKY77_RS11105 WP_237662144.1 2197332..2198372(+) (recA) [Sutcliffiella sp. FSL R7-0096]
GTGAGTGATCGTAAAGCTGCATTAGATATGGCGTTAAAACAGATAGAAAAGCAATTCGGTAAAGGTTCCATCATGAAGTT
GGGGGAACAAACGGAACGAAAAATCTCTACTATTCCGAGTGGGTCATTGGCTTTGGACGTTGCCTTGGGGGCCGGTGGAT
ATCCGCGAGGAAGAGTGGTAGAAATATATGGACCGGAATCTTCCGGTAAAACAACTGTGGCACTTCATGCCATTGCTGAG
GTACAGCAACAAGGTGGACAAGCTGCATTTATTGATGCCGAGCACGCATTGGACCCTGTTTATGCCCAAAAGCTTGGTGT
AAACATTGATGAGCTTCTTCTCTCACAACCAGATACTGGTGAACAAGCATTGGAAATTGCAGAAGCACTTGTGAGAAGTG
GTGCGGTTGACATTATCGTTGTCGATTCTGTTGCGGCCCTAGTACCTAAAGCGGAAATAGAAGGGGAAATGGGTGATTCC
CATGTCGGTCTTCAGGCACGTCTTATGTCCCAAGCCCTTCGTAAACTTTCGGGTGCCATCAATAAATCCAAAACCATTGC
TATTTTCATCAACCAGATTCGTGAAAAAGTCGGGGTAATGTTTGGAAATCCTGAAACGACCCCTGGTGGCCGTGCGCTGA
AATTCTATTCTTCCGTGCGACTTGAAGTGCGTCGTGCTGAGCAATTGAAACAAGGACATGATATTGTCGGGAACAAAACA
AAAATTAAAGTCGTTAAAAATAAAATCGCTCCTCCTTTCAAAGTAGCTGAAGTGGATATCATGTACGGTGAAGGAATATC
CAGAGAAGGTGAAGTAATTGATATGGGATCCGATCTTGATATTGTTCAAAAGAGTGGATCATGGTACTCATATAATGAAG
AAAGATTAGGACAAGGTCGCGAAAATGCGAAACAGTTCCTAAAGGAAAATAAGGATGTCCTAAAAGAAATCCATCAGCAA
ATCCGTGATCATCATGGATTAGATAAAGAAATCAATGCTCCTGCGGAAGAAGAAATGGATCAAGAAGAATTAGATTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

94.798

0.85
  recA Latilactobacillus sakei subsp. sakei 23K

75.692

93.931

0.711
  recA Streptococcus pyogenes NZ131

67.422

100

0.688
  recA Streptococcus mutans UA159

67.723

100

0.679
  recA Streptococcus mitis SK321

69.697

95.376

0.665
  recA Streptococcus mitis NCTC 12261

69.394

95.376

0.662
  recA Streptococcus pneumoniae Rx1

69.394

95.376

0.662
  recA Streptococcus pneumoniae D39

69.394

95.376

0.662
  recA Streptococcus pneumoniae R6

69.394

95.376

0.662
  recA Streptococcus pneumoniae TIGR4

69.394

95.376

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.879

95.376

0.647
  recA Neisseria gonorrhoeae MS11

63.663

99.422

0.633
  recA Neisseria gonorrhoeae MS11

63.663

99.422

0.633
  recA Neisseria gonorrhoeae strain FA1090

63.663

99.422

0.633
  recA Vibrio cholerae strain A1552

66.044

92.775

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

92.775

0.613
  recA Acinetobacter baylyi ADP1

60.519

100

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.018

97.399

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.462

0.604
  recA Glaesserella parasuis strain SC1401

60.116

100

0.601
  recA Acinetobacter baumannii D1279779

60.704

98.555

0.598
  recA Helicobacter pylori 26695

60.526

98.844

0.598
  recA Helicobacter pylori strain NCTC11637

60.526

98.844

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

93.353

0.569

Multiple sequence alignment