Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSQ95_RS06825 Genome accession   NZ_CP151993
Coordinates   1459685..1460749 (+) Length   354 a.a.
NCBI ID   WP_340883934.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1454685..1465749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS06800 (NSQ95_06800) - 1455076..1455807 (+) 732 WP_340883942.1 SDR family oxidoreductase -
  NSQ95_RS06805 (NSQ95_06805) - 1455927..1456733 (+) 807 WP_169358718.1 YmfK family protein -
  NSQ95_RS06810 (NSQ95_06810) - 1456751..1457605 (+) 855 WP_340883939.1 RodZ domain-containing protein -
  NSQ95_RS06815 (NSQ95_06815) pgsA 1457662..1458240 (+) 579 WP_169358719.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ95_RS06820 (NSQ95_06820) cinA 1458256..1459512 (+) 1257 WP_340883937.1 competence/damage-inducible protein A Machinery gene
  NSQ95_RS06825 (NSQ95_06825) recA 1459685..1460749 (+) 1065 WP_340883934.1 recombinase RecA Machinery gene
  NSQ95_RS06830 (NSQ95_06830) rny 1461328..1462887 (+) 1560 WP_340883931.1 ribonuclease Y -
  NSQ95_RS06835 (NSQ95_06835) - 1462966..1463763 (+) 798 WP_169358656.1 TIGR00282 family metallophosphoesterase -
  NSQ95_RS06840 (NSQ95_06840) - 1463850..1464116 (+) 267 WP_169358657.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38236.60 Da        Isoelectric Point: 4.7457

>NTDB_id=983971 NSQ95_RS06825 WP_340883934.1 1459685..1460749(+) (recA) [Psychrobacillus sp. FSL W7-1457]
MANDRKAALEMALKQIEKQFGKGSVMKLGEKTDREISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIA
EIQKTGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEIIVIDSVAALVPKAEIEGEMGD
SHIGLQARLMSQALRKLSGVINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIMGNK
TKIKVVKNKVAPPFKTAEVDIMYGEGISQEGEIVDIGSEYDIIQKSGSWYAYNEERIGQGRENAKQFLKENPAIKEEVAL
KIRQSLGMTAGALVIAAHEPEDEDGEFELLLEDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=983971 NSQ95_RS06825 WP_340883934.1 1459685..1460749(+) (recA) [Psychrobacillus sp. FSL W7-1457]
TTGGCTAATGATCGTAAAGCAGCGTTAGAAATGGCTTTAAAACAAATAGAGAAACAATTTGGTAAAGGTTCCGTAATGAA
ATTAGGAGAGAAAACAGACCGTGAAATCTCTACCTCTTCAAGTGGTTCCCTAGCTCTTGATGCAGCACTTGGAATAGGCG
GATATCCAAGAGGTCGTATTATTGAAATTTATGGCCCAGAGAGCTCAGGTAAAACAACTGTAGCGCTTCACGCTATTGCA
GAAATACAAAAAACAGGTGGGCAAGCGGCATTTATTGATGCAGAGCATGCGTTGGACCCTGTATATGCACAAAAACTAGG
CGTTAACATAGATGAATTATTATTATCTCAACCCGACACTGGAGAGCAAGCCCTTGAAATCGCAGAAGCTCTAGTCCGCA
GTGGTGCGGTTGAAATCATTGTTATCGACTCTGTTGCAGCATTAGTACCAAAAGCGGAGATAGAAGGAGAAATGGGAGAC
TCTCATATTGGTCTTCAAGCTCGCTTAATGTCTCAGGCATTACGAAAACTTTCTGGAGTTATTAACAAATCTAACACTAT
AGCAATCTTTATTAACCAGATTCGTGAAAAAGTTGGAGTAATGTTTGGTAACCCGGAGGTAACGCCGGGTGGTCGCGCAC
TTAAATTCTACAGCTCTGTCCGCTTAGAAGTAAGACGTGCTGAAGCTATTAAACAAGGTACAGACATTATGGGTAACAAA
ACGAAAATTAAAGTAGTAAAAAACAAAGTTGCTCCACCATTTAAAACTGCAGAAGTAGATATTATGTACGGAGAAGGAAT
CTCTCAAGAAGGAGAAATCGTTGATATAGGTTCTGAATACGATATTATCCAAAAAAGTGGTTCTTGGTATGCTTACAATG
AAGAACGTATTGGCCAAGGGCGAGAAAACGCTAAGCAATTCTTGAAAGAAAACCCTGCTATTAAAGAAGAAGTGGCATTA
AAAATCCGTCAATCTCTAGGTATGACTGCTGGTGCACTTGTTATTGCAGCGCATGAGCCAGAGGACGAAGATGGCGAGTT
CGAGCTACTTTTAGAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.735

93.785

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

72.316

100

0.723
  recA Streptococcus pyogenes NZ131

65.527

99.153

0.65
  recA Streptococcus mutans UA159

68.373

93.785

0.641
  recA Streptococcus pneumoniae Rx1

67.771

93.785

0.636
  recA Streptococcus mitis NCTC 12261

67.771

93.785

0.636
  recA Streptococcus pneumoniae D39

67.771

93.785

0.636
  recA Streptococcus pneumoniae R6

67.771

93.785

0.636
  recA Streptococcus pneumoniae TIGR4

67.771

93.785

0.636
  recA Streptococcus mitis SK321

67.47

93.785

0.633
  recA Lactococcus lactis subsp. cremoris KW2

67.477

92.938

0.627
  recA Acinetobacter baumannii D1279779

62.216

99.435

0.619
  recA Vibrio cholerae strain A1552

61.671

98.023

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.671

98.023

0.605
  recA Neisseria gonorrhoeae MS11

65.432

91.525

0.599
  recA Neisseria gonorrhoeae MS11

65.432

91.525

0.599
  recA Neisseria gonorrhoeae strain FA1090

65.432

91.525

0.599
  recA Ralstonia pseudosolanacearum GMI1000

64.634

92.655

0.599
  recA Glaesserella parasuis strain SC1401

60.286

98.87

0.596
  recA Acinetobacter baylyi ADP1

60.807

98.023

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.714

98.87

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

93.22

0.582
  recA Pseudomonas stutzeri DSM 10701

62.424

93.22

0.582
  recA Helicobacter pylori strain NCTC11637

62.769

91.808

0.576
  recA Helicobacter pylori 26695

62.462

91.808

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.635

89.831

0.554

Multiple sequence alignment