Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ95_RS06820 Genome accession   NZ_CP151993
Coordinates   1458256..1459512 (+) Length   418 a.a.
NCBI ID   WP_340883937.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1453256..1464512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS06795 (NSQ95_06795) - 1453779..1455083 (+) 1305 WP_340883945.1 pitrilysin family protein -
  NSQ95_RS06800 (NSQ95_06800) - 1455076..1455807 (+) 732 WP_340883942.1 SDR family oxidoreductase -
  NSQ95_RS06805 (NSQ95_06805) - 1455927..1456733 (+) 807 WP_169358718.1 YmfK family protein -
  NSQ95_RS06810 (NSQ95_06810) - 1456751..1457605 (+) 855 WP_340883939.1 RodZ domain-containing protein -
  NSQ95_RS06815 (NSQ95_06815) pgsA 1457662..1458240 (+) 579 WP_169358719.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ95_RS06820 (NSQ95_06820) cinA 1458256..1459512 (+) 1257 WP_340883937.1 competence/damage-inducible protein A Machinery gene
  NSQ95_RS06825 (NSQ95_06825) recA 1459685..1460749 (+) 1065 WP_340883934.1 recombinase RecA Machinery gene
  NSQ95_RS06830 (NSQ95_06830) rny 1461328..1462887 (+) 1560 WP_340883931.1 ribonuclease Y -
  NSQ95_RS06835 (NSQ95_06835) - 1462966..1463763 (+) 798 WP_169358656.1 TIGR00282 family metallophosphoesterase -
  NSQ95_RS06840 (NSQ95_06840) - 1463850..1464116 (+) 267 WP_169358657.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46031.89 Da        Isoelectric Point: 5.6478

>NTDB_id=983970 NSQ95_RS06820 WP_340883937.1 1458256..1459512(+) (cinA) [Psychrobacillus sp. FSL W7-1457]
MKAEIIAVGSELLLGQISNTNARYISSQLAELGIDVYYHTVVGDNPNRLLEAIKIAENRADLIIFSGGLGPTKDDLTKET
ISKHLNKNLVLDDHAIIYIEDFFKRAGKVMTENNKKQALVLEGCTVLENKHGMAPGMLLSTEKHTYMLLPGPPKELEPMF
QFEAKPLLPKLLYKENVIMSHVIRFYGIGEAELENEVQDLLDNQTNPTLAPLASDGEVTLRLTAKADTEEEAWKRIEKLQ
AEILNRVGKHVYGYNNESLASKLRDILIDNKLTISAAESMTAGLFQSELAAVPGMGVALVGGIITYTEEVKINQLGVKRE
TIDEHSVVSSHVAEEMASRVKEKFETTIGVGITGAAGPDGHGDQPAGTVWIGIAYGDVAPISYKLNLSGMRNTNRLRTVK
FTIHYLIRLLREEGLSKI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=983970 NSQ95_RS06820 WP_340883937.1 1458256..1459512(+) (cinA) [Psychrobacillus sp. FSL W7-1457]
ATGAAAGCAGAGATTATTGCGGTAGGATCAGAATTATTGTTAGGACAAATTTCCAATACGAACGCAAGATATATATCCTC
CCAGCTGGCAGAGTTAGGGATCGATGTGTATTACCACACAGTAGTTGGAGACAATCCTAATCGTTTGTTAGAAGCTATAA
AAATCGCAGAAAATCGAGCTGACCTCATTATTTTTTCAGGAGGTTTAGGACCTACTAAAGATGATCTTACAAAAGAAACA
ATTTCTAAACACCTTAACAAAAATCTTGTATTAGATGATCATGCAATCATATATATAGAGGATTTCTTTAAAAGAGCTGG
AAAAGTAATGACAGAGAACAATAAAAAACAAGCATTAGTTTTAGAAGGCTGTACTGTCCTTGAAAACAAGCATGGAATGG
CTCCGGGGATGCTTCTTTCCACAGAGAAACATACATATATGTTATTGCCTGGCCCTCCAAAAGAATTAGAGCCGATGTTC
CAATTTGAGGCTAAGCCGCTGTTGCCTAAACTGCTTTATAAAGAAAATGTAATTATGTCCCATGTCATTCGCTTTTATGG
TATTGGCGAAGCAGAGCTGGAGAATGAAGTACAGGATTTATTGGACAATCAAACAAATCCTACCCTTGCGCCGCTAGCTT
CTGACGGAGAGGTAACATTACGACTTACTGCGAAAGCAGATACGGAAGAAGAAGCTTGGAAAAGGATTGAAAAGCTACAA
GCTGAAATCTTAAACCGTGTGGGCAAACATGTGTATGGATATAATAACGAATCTTTAGCCTCCAAGCTAAGAGATATACT
AATTGACAACAAGCTAACAATTTCTGCTGCCGAAAGTATGACAGCTGGACTTTTTCAATCAGAGTTGGCTGCAGTCCCAG
GAATGGGCGTAGCACTTGTAGGTGGCATTATCACCTACACTGAAGAAGTGAAAATCAATCAGCTTGGTGTTAAAAGAGAA
ACGATTGATGAACATAGTGTGGTTTCTAGTCATGTTGCAGAAGAAATGGCTAGTCGAGTCAAAGAAAAGTTTGAAACAAC
GATAGGTGTAGGTATTACTGGAGCAGCTGGACCAGATGGACATGGAGATCAACCGGCAGGAACGGTGTGGATTGGAATAG
CGTATGGAGACGTTGCTCCAATTTCTTATAAATTGAATCTATCCGGTATGAGAAACACAAATCGTTTAAGAACAGTTAAG
TTTACTATTCATTATTTGATTCGACTTTTAAGAGAAGAAGGATTATCGAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.67

98.565

0.519
  cinA Streptococcus pneumoniae TIGR4

44.235

100

0.45
  cinA Streptococcus pneumoniae Rx1

44

100

0.447
  cinA Streptococcus pneumoniae R6

44

100

0.447
  cinA Streptococcus pneumoniae D39

43.765

100

0.445
  cinA Streptococcus mitis SK321

47.258

91.627

0.433
  cinA Streptococcus mitis NCTC 12261

46.736

91.627

0.428
  cinA Streptococcus mutans UA159

47.09

90.431

0.426

Multiple sequence alignment