Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSS77_RS00010 Genome accession   NZ_CP151969
Coordinates   2051..3112 (-) Length   353 a.a.
NCBI ID   WP_342469801.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-3587     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..8112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS77_RS00005 (NSS77_00005) rny 47..1600 (-) 1554 WP_342469800.1 ribonuclease Y -
  NSS77_RS00010 (NSS77_00010) recA 2051..3112 (-) 1062 WP_342469801.1 recombinase RecA Machinery gene
  NSS77_RS00015 (NSS77_00015) cinA 3251..4504 (-) 1254 WP_342469802.1 competence/damage-inducible protein A Machinery gene
  NSS77_RS00020 (NSS77_00020) pgsA 4518..5096 (-) 579 WP_342469803.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS77_RS00025 (NSS77_00025) - 5195..6100 (-) 906 WP_342469804.1 RodZ family helix-turn-helix domain-containing protein -
  NSS77_RS00030 (NSS77_00030) - 6119..6898 (-) 780 WP_342469805.1 DUF3388 domain-containing protein -
  NSS77_RS00035 (NSS77_00035) - 7099..7356 (-) 258 WP_342469806.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38377.74 Da        Isoelectric Point: 4.6805

>NTDB_id=982585 NSS77_RS00010 WP_342469801.1 2051..3112(-) (recA) [Ureibacillus sp. FSL K6-3587]
MSDRKAALEMALKQIEKQFGKGSIMKLGEKTDLQISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPIYAQKLGVNIDELILSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTICIFINQVRDKIGVMFGNPETTPGGRALKFYSSIRLEVRRAETIKQGSEMVGNKT
KIKVVKNKVAPPFRTAEVDIMFGEGISKEGEIVDIGVELDIIQKSGSWYSYNDERIGQGRENAKQFLRANPEIRDEIAEK
IRESFGMASNTYMIAAHNDDEEVAEELPLFDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=982585 NSS77_RS00010 WP_342469801.1 2051..3112(-) (recA) [Ureibacillus sp. FSL K6-3587]
TTGAGTGATCGTAAAGCTGCCTTAGAAATGGCGTTAAAACAAATTGAAAAGCAATTCGGCAAAGGCTCCATCATGAAGCT
TGGCGAAAAAACAGACCTGCAAATTTCCACAGTTCCAAGCGGATCATTGGCCCTTGATGCAGCTCTGGGGGTTGGCGGAT
ATCCTAGAGGCCGAATTATCGAAATTTATGGTCCTGAATCATCCGGTAAGACAACGGTGGCATTGCACGCGATTGCGGAA
GTGCAAGCCCAAGGCGGACAAGCGGCATTTATCGATGCAGAACACGCGTTAGACCCAATTTATGCCCAAAAATTGGGCGT
CAACATTGATGAATTGATTCTTTCCCAACCAGATACAGGAGAGCAGGCATTGGAAATCGCTGAGGCGTTGGTACGAAGCG
GCGCCATTGATATCATCGTCATCGACTCTGTGGCGGCATTGGTGCCGAAAGCGGAAATCGAAGGCGAGATGGGCGACTCT
CACATGGGATTGCAAGCCCGCCTCATGTCCCAAGCTTTACGAAAATTGTCCGGGGTAATCAATAAATCCAATACGATTTG
CATTTTCATCAACCAAGTGCGCGATAAAATCGGCGTCATGTTTGGAAATCCGGAAACAACACCTGGAGGCCGCGCTTTAA
AATTCTATTCTTCCATCCGTTTGGAAGTCCGCCGTGCGGAAACAATTAAGCAAGGCAGTGAAATGGTGGGAAATAAAACA
AAAATTAAAGTGGTAAAAAATAAAGTTGCCCCTCCATTCCGAACAGCTGAAGTGGATATTATGTTTGGTGAAGGCATTTC
CAAAGAAGGCGAAATCGTGGATATCGGTGTGGAATTGGACATCATTCAAAAGAGCGGTTCTTGGTATTCCTATAACGATG
AACGAATCGGCCAAGGACGGGAAAATGCGAAACAATTCTTAAGAGCAAATCCGGAAATCCGGGATGAAATTGCAGAAAAA
ATCCGTGAATCTTTTGGCATGGCATCAAACACATATATGATCGCTGCCCATAACGACGATGAAGAAGTGGCGGAAGAATT
GCCATTATTTGACGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.545

93.484

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

74.54

92.351

0.688
  recA Streptococcus mitis NCTC 12261

64.607

100

0.652
  recA Streptococcus pneumoniae Rx1

65.616

98.867

0.649
  recA Streptococcus pneumoniae D39

65.616

98.867

0.649
  recA Streptococcus pneumoniae R6

65.616

98.867

0.649
  recA Streptococcus pneumoniae TIGR4

65.616

98.867

0.649
  recA Streptococcus mitis SK321

65.517

98.584

0.646
  recA Lactococcus lactis subsp. cremoris KW2

64.841

98.3

0.637
  recA Streptococcus mutans UA159

67.477

93.201

0.629
  recA Streptococcus pyogenes NZ131

67.378

92.918

0.626
  recA Neisseria gonorrhoeae MS11

67.593

91.785

0.62
  recA Neisseria gonorrhoeae MS11

67.593

91.785

0.62
  recA Neisseria gonorrhoeae strain FA1090

67.593

91.785

0.62
  recA Glaesserella parasuis strain SC1401

61.364

99.717

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.529

96.317

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

93.201

0.603
  recA Ralstonia pseudosolanacearum GMI1000

68.051

88.669

0.603
  recA Acinetobacter baylyi ADP1

62.099

97.167

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.363

94.334

0.598
  recA Vibrio cholerae strain A1552

63.363

94.334

0.598
  recA Acinetobacter baumannii D1279779

61.471

96.317

0.592
  recA Pseudomonas stutzeri DSM 10701

60

97.734

0.586
  recA Helicobacter pylori strain NCTC11637

63.692

92.068

0.586
  recA Helicobacter pylori 26695

63.692

92.068

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

90.652

0.558

Multiple sequence alignment