Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSS77_RS00015 Genome accession   NZ_CP151969
Coordinates   3251..4504 (-) Length   417 a.a.
NCBI ID   WP_342469802.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-3587     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1..9504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS77_RS00005 (NSS77_00005) rny 47..1600 (-) 1554 WP_342469800.1 ribonuclease Y -
  NSS77_RS00010 (NSS77_00010) recA 2051..3112 (-) 1062 WP_342469801.1 recombinase RecA Machinery gene
  NSS77_RS00015 (NSS77_00015) cinA 3251..4504 (-) 1254 WP_342469802.1 competence/damage-inducible protein A Machinery gene
  NSS77_RS00020 (NSS77_00020) pgsA 4518..5096 (-) 579 WP_342469803.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS77_RS00025 (NSS77_00025) - 5195..6100 (-) 906 WP_342469804.1 RodZ family helix-turn-helix domain-containing protein -
  NSS77_RS00030 (NSS77_00030) - 6119..6898 (-) 780 WP_342469805.1 DUF3388 domain-containing protein -
  NSS77_RS00035 (NSS77_00035) - 7099..7356 (-) 258 WP_342469806.1 DUF3243 domain-containing protein -
  NSS77_RS00040 (NSS77_00040) - 7401..8129 (-) 729 WP_342469807.1 SDR family oxidoreductase -
  NSS77_RS00045 (NSS77_00045) - 8126..9421 (-) 1296 WP_342469808.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45067.72 Da        Isoelectric Point: 5.6553

>NTDB_id=982586 NSS77_RS00015 WP_342469802.1 3251..4504(-) (cinA) [Ureibacillus sp. FSL K6-3587]
MNAEIIAVGSELLLGQIANTNAKFISAQLSEIGINVYFHSVIGDNGGRLKKAIEIAESRADLIIFSGGLGPTKDDLTKET
LAGHLNVPLVYDENALATIESFFKNQGRTMTENNKKQALVLQGSEVLPNHHGLAPGMMLQKDGRTYILLPGPPKELEPMF
QFEAKPRLASLISKGGVILSHVLRFYGIGEAELETEIQHILDAQTNPTIAPLASDGEVMLRITAKADSKEEAWKLIDEEK
QEILSIVGKYNYGTDDDTLASKTVEMLLHHKLTISAAESLTAGLFQSELAEIPGVSGALVGGMVTYTKEAKINQLGIPKE
LLDQHGIVSSECAASMAKNVREKFGTDIGVGLTGAAGPEPHDGEPAGTVWIGIAIGDDVVTKKLRLSGLRNTNRLRAVKY
TFSYLIRLLEEKGYKKV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=982586 NSS77_RS00015 WP_342469802.1 3251..4504(-) (cinA) [Ureibacillus sp. FSL K6-3587]
ATGAATGCCGAAATAATTGCCGTGGGCTCCGAATTGCTTTTAGGTCAAATTGCGAATACGAATGCGAAATTTATTTCCGC
CCAATTATCCGAAATAGGCATTAATGTTTATTTTCATTCTGTGATTGGCGATAATGGGGGAAGATTGAAAAAAGCGATTG
AAATTGCTGAATCCCGCGCTGATTTGATCATTTTTTCCGGCGGATTGGGACCGACGAAGGATGATTTGACAAAGGAAACG
CTTGCCGGGCATTTGAATGTGCCGCTTGTGTATGATGAAAATGCGTTGGCGACCATTGAATCATTTTTTAAAAACCAAGG
CCGGACAATGACGGAGAATAATAAAAAACAAGCCCTGGTTTTGCAAGGAAGTGAAGTGTTGCCGAATCATCACGGCCTTG
CTCCCGGCATGATGCTGCAAAAGGATGGCCGGACTTACATATTGTTGCCTGGTCCGCCAAAGGAACTGGAGCCGATGTTT
CAATTTGAAGCAAAGCCTCGGCTTGCTTCCCTCATCAGCAAAGGCGGGGTAATTCTTTCCCATGTTCTCCGGTTTTATGG
TATCGGAGAAGCGGAGTTGGAAACGGAAATTCAACATATTTTGGATGCCCAAACAAATCCGACGATCGCCCCGCTCGCCT
CTGATGGAGAAGTGATGCTGCGCATTACGGCAAAAGCGGATTCAAAAGAAGAGGCATGGAAATTAATTGATGAAGAGAAA
CAGGAAATATTATCGATTGTCGGAAAATACAACTATGGTACAGACGATGATACGTTGGCTTCAAAAACCGTTGAAATGCT
GCTTCATCACAAATTGACCATTTCAGCAGCGGAAAGTTTGACGGCCGGGCTATTCCAATCGGAACTGGCGGAAATCCCGG
GTGTTAGCGGAGCCCTTGTTGGAGGAATGGTCACTTATACGAAAGAAGCAAAAATCAACCAGTTGGGCATACCAAAAGAA
TTGCTGGATCAACATGGCATCGTCAGCAGCGAATGTGCCGCAAGTATGGCGAAAAATGTCCGTGAAAAATTCGGCACGGA
TATCGGGGTTGGATTGACCGGTGCTGCCGGTCCGGAGCCTCACGATGGAGAACCGGCAGGAACGGTTTGGATCGGCATTG
CCATTGGGGATGATGTGGTGACGAAAAAACTCCGGCTTTCTGGCCTACGAAATACAAACCGGTTACGCGCGGTAAAATAT
ACGTTCAGTTATTTGATCCGATTGCTTGAGGAAAAAGGGTATAAAAAAGTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.927

98.321

0.52
  cinA Streptococcus mitis SK321

45.476

100

0.458
  cinA Streptococcus pneumoniae TIGR4

45.803

100

0.458
  cinA Streptococcus pneumoniae Rx1

45.564

100

0.456
  cinA Streptococcus pneumoniae R6

45.564

100

0.456
  cinA Streptococcus mitis NCTC 12261

45.238

100

0.456
  cinA Streptococcus pneumoniae D39

45.324

100

0.453
  cinA Streptococcus mutans UA159

44.417

98.801

0.439
  cinA Streptococcus suis isolate S10

39.904

99.76

0.398

Multiple sequence alignment