Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NST62_RS04230 Genome accession   NZ_CP151968
Coordinates   879500..880561 (+) Length   353 a.a.
NCBI ID   WP_141601049.1    Uniprot ID   A0A540V6V0
Organism   Ureibacillus sp. FSL K6-8385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874500..885561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST62_RS04205 (NST62_04205) - 875226..875486 (+) 261 WP_141601054.1 DUF3243 domain-containing protein -
  NST62_RS04210 (NST62_04210) - 875721..876503 (+) 783 WP_342463164.1 DUF3388 domain-containing protein -
  NST62_RS04215 (NST62_04215) - 876543..877460 (+) 918 WP_328215101.1 RodZ domain-containing protein -
  NST62_RS04220 (NST62_04220) pgsA 877513..878094 (+) 582 WP_141601051.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST62_RS04225 (NST62_04225) cinA 878108..879361 (+) 1254 WP_141601050.1 competence/damage-inducible protein A Machinery gene
  NST62_RS04230 (NST62_04230) recA 879500..880561 (+) 1062 WP_141601049.1 recombinase RecA Machinery gene
  NST62_RS04235 (NST62_04235) rny 881014..882567 (+) 1554 WP_141601048.1 ribonuclease Y -
  NST62_RS04240 (NST62_04240) - 882785..883906 (+) 1122 WP_342463165.1 S-layer homology domain-containing protein -
  NST62_RS04245 (NST62_04245) - 883989..884735 (+) 747 WP_141601046.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38345.79 Da        Isoelectric Point: 4.7846

>NTDB_id=982562 NST62_RS04230 WP_141601049.1 879500..880561(+) (recA) [Ureibacillus sp. FSL K6-8385]
MSDRKAALEMALKQIEKQFGKGSVMKLGEKTNLQISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPIYAQKLGVNIDELILSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTICIFINQVRDKIGVMFGNPETTPGGRALKFYASIRLEVRRAETIKQGNEMVGNKT
KIKVVKNKVAPPFRTAEVDIMFGEGISKEGEIVDIGVDLDIIQKSGSWYSYNDERIGQGRENAKQFLKANPEIRDEIAKK
IRESFGMASNSYMIAAHDEDDEIAEELPLFEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=982562 NST62_RS04230 WP_141601049.1 879500..880561(+) (recA) [Ureibacillus sp. FSL K6-8385]
TTGAGTGACCGTAAAGCTGCCTTGGAAATGGCATTAAAACAAATCGAAAAGCAATTCGGCAAAGGCTCCGTCATGAAACT
TGGGGAAAAAACAAATCTGCAAATTTCAACAGTTCCAAGCGGTTCGTTGGCTCTTGACGCCGCGCTCGGAGTTGGAGGAT
ACCCTAGAGGACGTATCATCGAAATTTATGGTCCGGAATCATCCGGTAAAACAACAGTGGCATTGCATGCCATTGCGGAA
GTGCAGGCGCAAGGCGGACAAGCGGCATTTATCGATGCGGAGCACGCTCTGGATCCGATTTATGCCCAAAAATTAGGGGT
CAATATTGATGAATTGATCCTTTCCCAGCCCGATACAGGGGAACAGGCGTTGGAAATTGCTGAAGCATTGGTACGGAGCG
GTGCAATCGATATTATTGTCATCGACTCTGTTGCCGCGCTGGTTCCTAAAGCGGAAATCGAAGGGGAAATGGGCGATTCC
CACATGGGATTGCAAGCCCGCCTCATGTCCCAGGCGCTCCGGAAATTATCCGGCGTCATCAATAAATCCAATACGATTTG
CATTTTCATCAACCAGGTCCGCGATAAAATCGGCGTCATGTTTGGCAATCCGGAAACGACACCTGGCGGACGCGCATTAA
AATTCTACGCCTCCATCCGTCTGGAAGTCCGCCGTGCGGAGACAATCAAGCAAGGCAACGAAATGGTGGGAAATAAAACA
AAAATTAAAGTCGTAAAAAACAAAGTGGCGCCTCCGTTCCGGACAGCCGAAGTGGATATCATGTTCGGGGAAGGAATTTC
CAAAGAAGGGGAAATCGTGGATATCGGAGTAGACCTGGACATTATCCAGAAGAGCGGTTCCTGGTATTCCTACAATGATG
AACGGATTGGCCAGGGCCGGGAAAATGCCAAACAATTCTTGAAGGCAAATCCGGAAATCCGCGATGAAATCGCCAAAAAA
ATTCGCGAATCCTTCGGTATGGCATCCAATTCCTATATGATTGCGGCCCACGATGAAGACGATGAAATCGCGGAAGAATT
GCCTTTATTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A540V6V0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.636

93.484

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

69.801

99.433

0.694
  recA Streptococcus pyogenes NZ131

65.439

100

0.654
  recA Streptococcus mitis SK321

65.07

100

0.654
  recA Streptococcus pneumoniae TIGR4

68.485

93.484

0.64
  recA Streptococcus pneumoniae D39

68.485

93.484

0.64
  recA Streptococcus mitis NCTC 12261

68.485

93.484

0.64
  recA Streptococcus pneumoniae Rx1

68.485

93.484

0.64
  recA Streptococcus pneumoniae R6

68.485

93.484

0.64
  recA Streptococcus mutans UA159

67.781

93.201

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.467

94.618

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.223

96.601

0.62
  recA Neisseria gonorrhoeae MS11

67.284

91.785

0.618
  recA Neisseria gonorrhoeae MS11

67.284

91.785

0.618
  recA Neisseria gonorrhoeae strain FA1090

67.284

91.785

0.618
  recA Acinetobacter baylyi ADP1

63.265

97.167

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

93.201

0.609
  recA Glaesserella parasuis strain SC1401

62.941

96.317

0.606
  recA Helicobacter pylori strain NCTC11637

63.018

95.751

0.603
  recA Helicobacter pylori 26695

63.018

95.751

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.964

94.334

0.603
  recA Vibrio cholerae strain A1552

63.964

94.334

0.603
  recA Ralstonia pseudosolanacearum GMI1000

67.412

88.669

0.598
  recA Acinetobacter baumannii D1279779

61.652

96.034

0.592
  recA Pseudomonas stutzeri DSM 10701

60.29

97.734

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

92.068

0.572

Multiple sequence alignment