Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST62_RS04225 Genome accession   NZ_CP151968
Coordinates   878108..879361 (+) Length   417 a.a.
NCBI ID   WP_141601050.1    Uniprot ID   A0A540V703
Organism   Ureibacillus sp. FSL K6-8385     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 873108..884361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST62_RS04195 (NST62_04195) - 873161..874456 (+) 1296 WP_141601056.1 pitrilysin family protein -
  NST62_RS04200 (NST62_04200) - 874453..875181 (+) 729 WP_141601055.1 SDR family oxidoreductase -
  NST62_RS04205 (NST62_04205) - 875226..875486 (+) 261 WP_141601054.1 DUF3243 domain-containing protein -
  NST62_RS04210 (NST62_04210) - 875721..876503 (+) 783 WP_342463164.1 DUF3388 domain-containing protein -
  NST62_RS04215 (NST62_04215) - 876543..877460 (+) 918 WP_328215101.1 RodZ domain-containing protein -
  NST62_RS04220 (NST62_04220) pgsA 877513..878094 (+) 582 WP_141601051.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST62_RS04225 (NST62_04225) cinA 878108..879361 (+) 1254 WP_141601050.1 competence/damage-inducible protein A Machinery gene
  NST62_RS04230 (NST62_04230) recA 879500..880561 (+) 1062 WP_141601049.1 recombinase RecA Machinery gene
  NST62_RS04235 (NST62_04235) rny 881014..882567 (+) 1554 WP_141601048.1 ribonuclease Y -
  NST62_RS04240 (NST62_04240) - 882785..883906 (+) 1122 WP_342463165.1 S-layer homology domain-containing protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45114.95 Da        Isoelectric Point: 6.5109

>NTDB_id=982561 NST62_RS04225 WP_141601050.1 878108..879361(+) (cinA) [Ureibacillus sp. FSL K6-8385]
MNAEIIAVGSELLLGQIANTNAQFISSQLSEIGVNVYYHSVIGDNGGRLKKAIEIAESRADLIIFSGGLGPTKDDLTKET
LAEHLNVPLVFDENALEVIEQFYKNQGRTITENSRKQALILQGSEVLPNHHGLAPGMMLQKGGRTYILLPGPPKELEPMF
QFEAKPKLASLISKGGVILSHVLRFYGIGEAELETRIQHILDAQINPTIAPLASDGEVLLRITAKADSKEHAWNLINEKK
KEILDIVGKYNYGVDDDTLASKAVNMLLHHKLTISAAESLTAGLFQSELAEIPGVSGALVGGMVTYTKEAKMKQLGIPKE
LLDRYGVVSSECAAGMAKKVREKFGTDIGVGLTGAAGPEPHDGEPAGTVWIGIAIGDDVATKKLQLSGLRNTNRIRTVKY
TLSYLIRLLEEKGYSKV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=982561 NST62_RS04225 WP_141601050.1 878108..879361(+) (cinA) [Ureibacillus sp. FSL K6-8385]
ATGAATGCCGAAATTATTGCCGTCGGGTCCGAATTGCTTTTAGGCCAGATCGCCAATACGAATGCCCAATTCATTTCCTC
CCAATTATCGGAAATAGGCGTTAACGTATATTATCATTCGGTTATAGGTGATAATGGGGGAAGGCTCAAAAAAGCGATTG
AAATCGCCGAATCCCGTGCAGATCTGATAATATTTTCCGGCGGATTGGGGCCCACAAAGGACGATTTAACGAAGGAAACT
CTTGCGGAACATTTAAACGTACCCCTTGTATTTGATGAAAATGCATTGGAAGTGATTGAGCAGTTTTACAAAAACCAGGG
CAGAACCATTACGGAAAACAGCAGAAAACAGGCTTTGATTTTACAAGGAAGCGAAGTGCTGCCGAATCATCACGGCCTTG
CGCCGGGCATGATGCTCCAGAAAGGGGGCAGGACGTATATTTTATTGCCCGGGCCGCCAAAAGAACTGGAGCCGATGTTC
CAATTCGAAGCGAAACCAAAGCTCGCTTCCCTCATCAGCAAGGGCGGAGTGATCCTGTCCCATGTTCTCCGTTTCTATGG
CATTGGGGAAGCGGAGCTCGAGACGAGAATCCAACATATTTTAGATGCGCAAATCAATCCGACCATCGCTCCCCTTGCCT
CTGACGGCGAAGTGCTCTTGCGCATTACGGCCAAAGCGGATTCCAAAGAACATGCCTGGAACTTAATCAATGAAAAGAAA
AAAGAAATTTTGGATATCGTCGGTAAATACAACTATGGAGTGGATGATGACACCCTTGCATCCAAAGCGGTCAACATGTT
GTTGCACCATAAGTTGACGATTTCGGCCGCCGAAAGTTTAACGGCCGGCCTGTTTCAATCGGAGCTTGCGGAGATACCCG
GGGTGAGCGGCGCACTCGTCGGAGGAATGGTCACATATACAAAAGAGGCGAAAATGAAGCAGCTGGGCATTCCAAAAGAA
CTGCTTGACCGTTATGGCGTTGTCAGCAGCGAATGTGCTGCCGGCATGGCGAAAAAAGTCCGTGAAAAGTTTGGCACGGA
TATCGGAGTAGGTTTGACAGGAGCTGCGGGGCCGGAGCCGCATGATGGTGAACCGGCAGGAACGGTTTGGATCGGGATTG
CAATCGGCGATGATGTCGCGACGAAAAAGCTTCAATTATCCGGACTTCGAAATACCAACCGTATACGGACCGTCAAGTAT
ACGTTGAGCTATTTGATTCGATTGCTTGAAGAAAAAGGGTATAGTAAAGTGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A540V703

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.439

98.321

0.516
  cinA Streptococcus pneumoniae TIGR4

45.324

100

0.453
  cinA Streptococcus pneumoniae R6

45.084

100

0.451
  cinA Streptococcus pneumoniae Rx1

45.084

100

0.451
  cinA Streptococcus pneumoniae D39

44.844

100

0.448
  cinA Streptococcus mitis SK321

47.409

92.566

0.439
  cinA Streptococcus mitis NCTC 12261

46.891

92.566

0.434
  cinA Streptococcus mutans UA159

43.284

96.403

0.417
  cinA Streptococcus suis isolate S10

39.394

94.964

0.374

Multiple sequence alignment