Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NST20_RS06360 Genome accession   NZ_CP151954
Coordinates   1316730..1317797 (+) Length   355 a.a.
NCBI ID   WP_019721123.1    Uniprot ID   -
Organism   Weizmannia sp. FSL W8-0676     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311730..1322797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST20_RS06335 (NST20_06335) - 1312258..1312518 (+) 261 WP_013859159.1 DUF3243 domain-containing protein -
  NST20_RS06340 (NST20_06340) - 1312710..1313501 (+) 792 WP_017554614.1 DUF3388 domain-containing protein -
  NST20_RS06345 (NST20_06345) - 1313518..1314423 (+) 906 WP_195850471.1 RodZ family helix-turn-helix domain-containing protein -
  NST20_RS06350 (NST20_06350) pgsA 1314479..1315057 (+) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST20_RS06355 (NST20_06355) cinA 1315229..1316461 (+) 1233 WP_342400274.1 competence/damage-inducible protein A Machinery gene
  NST20_RS06360 (NST20_06360) recA 1316730..1317797 (+) 1068 WP_019721123.1 recombinase RecA Machinery gene
  NST20_RS06365 (NST20_06365) rny 1318272..1319834 (+) 1563 WP_118499371.1 ribonuclease Y -
  NST20_RS06370 (NST20_06370) - 1319921..1320721 (+) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  NST20_RS06375 (NST20_06375) spoVS 1321092..1321352 (+) 261 WP_013859169.1 stage V sporulation protein SpoVS -
  NST20_RS06380 (NST20_06380) - 1321541..1322452 (+) 912 WP_342400275.1 peptidase U32 family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38403.40 Da        Isoelectric Point: 4.7416

>NTDB_id=981994 NST20_RS06360 WP_019721123.1 1316730..1317797(+) (recA) [Weizmannia sp. FSL W8-0676]
MNDRQQALDQALKQIEKQFGKGSIMRLGEQTDRVVSTIPTGSLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPRAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGRENAKQFLKENADLKNEIAAK
IREHYDLAEDAGSHENEKAADEKEAVEGQEELNLE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=981994 NST20_RS06360 WP_019721123.1 1316730..1317797(+) (recA) [Weizmannia sp. FSL W8-0676]
GTGAATGATCGTCAACAAGCCTTAGACCAGGCTCTGAAACAAATAGAAAAGCAATTTGGCAAGGGTTCCATTATGCGGCT
GGGCGAGCAGACCGACCGGGTTGTCTCCACGATCCCGACCGGTTCGCTTGCGCTTGATATTGCCCTTGGTGTCGGCGGCT
ACCCGCGCGGCCGCGTCATTGAAATATACGGCCCTGAAAGTTCCGGTAAAACAACGGTTGCCCTGCATGCGATTGCGGAA
GTCCAGGCACAGGGCGGACAGGCTGCCTTTATTGATGCGGAACACGCACTTGACCCGGTTTATGCCCAAAAGCTCGGTGT
CAACATTGATGAACTGCTCCTGTCCCAGCCGGATACGGGCGAACAGGCGCTGGAAATTGCAGAAGCGCTCGTCCGCAGCG
GCGCAGTGGACATTATTGTCGTTGACTCTGTTGCTGCGCTTGTGCCGCGAGCGGAAATTGAAGGAGAAATGGGCGATTCC
CATGTCGGCCTCCAGGCACGGCTGATGTCCCAGGCGCTGCGGAAATTATCGGGCGCGATCAACAAATCAAACACGATTGC
GATTTTCATTAACCAGATCCGGGAAAAAGTCGGCGTGATGTTCGGCAATCCTGAAGTCACACCGGGCGGACGCGCGCTCA
AATTTTACTCGTCCGTGCGCCTTGAAGTGCGCCGCGCCGAACAGATCAAACAAGGGAGTGACATTGTCGGCAACAAAACG
AAAATCAAGGTTGTCAAAAACAAAGTAGCGCCTCCGTTTAAAACGGCAGAAGTGGATATTATGTACGGCGAAGGGATCTC
AAAAGAAGGCGAGATCGTCGATATGGGAAGCGACCTTGACATCATCCAAAAAAGCGGGGCCTGGTATGCTTATAACGGCG
AGCGGCTCGGCCAGGGGCGTGAAAATGCGAAACAGTTTTTAAAGGAAAATGCGGATTTGAAAAACGAGATTGCCGCAAAA
ATCCGGGAACATTACGACCTGGCGGAAGATGCCGGTTCCCATGAAAACGAAAAAGCTGCAGATGAAAAGGAAGCTGTGGA
AGGACAGGAAGAATTGAATTTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.113

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

74.194

96.056

0.713
  recA Streptococcus pneumoniae D39

66.482

100

0.676
  recA Streptococcus pneumoniae Rx1

66.482

100

0.676
  recA Streptococcus pneumoniae R6

66.482

100

0.676
  recA Streptococcus pneumoniae TIGR4

66.482

100

0.676
  recA Streptococcus mutans UA159

68.286

98.592

0.673
  recA Streptococcus mitis SK321

66.76

100

0.673
  recA Streptococcus mitis NCTC 12261

66.76

100

0.673
  recA Streptococcus pyogenes NZ131

70.732

92.394

0.654
  recA Lactococcus lactis subsp. cremoris KW2

67.267

93.803

0.631
  recA Neisseria gonorrhoeae MS11

66.46

90.704

0.603
  recA Neisseria gonorrhoeae MS11

66.46

90.704

0.603
  recA Neisseria gonorrhoeae strain FA1090

66.46

90.704

0.603
  recA Vibrio cholerae strain A1552

66.355

90.423

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

90.423

0.6
  recA Ralstonia pseudosolanacearum GMI1000

68.387

87.324

0.597
  recA Acinetobacter baumannii D1279779

64.596

90.704

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

92.394

0.583
  recA Glaesserella parasuis strain SC1401

60.411

96.056

0.58
  recA Acinetobacter baylyi ADP1

63.777

90.986

0.58
  recA Helicobacter pylori 26695

63.665

90.704

0.577
  recA Helicobacter pylori strain NCTC11637

63.665

90.704

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.354

90.704

0.575
  recA Pseudomonas stutzeri DSM 10701

63.438

90.141

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

90.141

0.555

Multiple sequence alignment