Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST20_RS06355 Genome accession   NZ_CP151954
Coordinates   1315229..1316461 (+) Length   410 a.a.
NCBI ID   WP_342400274.1    Uniprot ID   -
Organism   Weizmannia sp. FSL W8-0676     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1310229..1321461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST20_RS06330 (NST20_06330) - 1311339..1312061 (+) 723 WP_328013938.1 SDR family oxidoreductase -
  NST20_RS06335 (NST20_06335) - 1312258..1312518 (+) 261 WP_013859159.1 DUF3243 domain-containing protein -
  NST20_RS06340 (NST20_06340) - 1312710..1313501 (+) 792 WP_017554614.1 DUF3388 domain-containing protein -
  NST20_RS06345 (NST20_06345) - 1313518..1314423 (+) 906 WP_195850471.1 RodZ family helix-turn-helix domain-containing protein -
  NST20_RS06350 (NST20_06350) pgsA 1314479..1315057 (+) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST20_RS06355 (NST20_06355) cinA 1315229..1316461 (+) 1233 WP_342400274.1 competence/damage-inducible protein A Machinery gene
  NST20_RS06360 (NST20_06360) recA 1316730..1317797 (+) 1068 WP_019721123.1 recombinase RecA Machinery gene
  NST20_RS06365 (NST20_06365) rny 1318272..1319834 (+) 1563 WP_118499371.1 ribonuclease Y -
  NST20_RS06370 (NST20_06370) - 1319921..1320721 (+) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  NST20_RS06375 (NST20_06375) spoVS 1321092..1321352 (+) 261 WP_013859169.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44890.53 Da        Isoelectric Point: 5.7068

>NTDB_id=981993 NST20_RS06355 WP_342400274.1 1315229..1316461(+) (cinA) [Weizmannia sp. FSL W8-0676]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIGKKLVTDEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSRNHYYMLLPGPPHELEPMF
IHYASPAIQDELETIEKIESRVLRFFGIGESQLETEIRQILETQSNPTVAPLAKEGEVTLRITAKHQSVATANQMIDQVE
KEILQIAGSYFYGYNDTTLMEALFEKLSEKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETAAYLLELSGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=981993 NST20_RS06355 WP_342400274.1 1315229..1316461(+) (cinA) [Weizmannia sp. FSL W8-0676]
GTGAATGCCGAAATAATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAACGCCACATTTATTGCTGC
GCAATTGGCAGAAATCGGCGTGGATGTGTACTATCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATTC
GTACAGCGGAGGGCCGCGCCGATTTATTGATTTTTACTGGCGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCATATCGGAAAAAAACTGGTCACAGACGAAGATGCCATGCGTTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCGCTTGTCATTGAAGGCTCGAAAGTGTTTCCGAATGACCACGGCATGG
CGCCGGGCATGCTGGCCAAAAGCCGAAACCACTATTACATGCTGCTCCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTATGCCAGTCCCGCGATCCAGGATGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGTTTCTTCGG
GATCGGCGAATCCCAACTGGAAACAGAAATCCGCCAAATATTGGAAACCCAGAGCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTCAGGATTACGGCGAAACACCAGTCGGTGGCAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTTTGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACGTTAATGGAGGCCCTGTTTGAAAAACT
TTCAGAAAAACAGCTGACGCTGGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACGATGCTGAAAGGCGGCGTTGTTGTCTATTCGAACGAAGCGAAGATGAAGCTTGCCAAAGTGAAAAAAGAA
ACACTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGCAGCATCATGGATGCCGA
CATTGGCATCAGTTTTACAGGTGTGGCCGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CCATAAAAGGGAAAGAAACGGCCGCCTATCTGTTGGAACTTTCCGGATCCCGGAACAACGTCCGCACGAGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.618

99.512

0.563
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.476
  cinA Streptococcus mitis SK321

46.411

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.471
  cinA Streptococcus pneumoniae R6

46.172

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.172

100

0.471
  cinA Streptococcus pneumoniae D39

45.933

100

0.468
  cinA Streptococcus mutans UA159

45.363

97.317

0.441
  cinA Streptococcus suis isolate S10

39.683

92.195

0.366

Multiple sequence alignment