Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSS81_RS21315 Genome accession   NZ_CP151943
Coordinates   4238598..4239638 (+) Length   346 a.a.
NCBI ID   WP_342430629.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4233598..4244638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS21290 (NSS81_21290) - 4234061..4234318 (+) 258 WP_342430624.1 DUF3243 domain-containing protein -
  NSS81_RS21295 (NSS81_21295) - 4234499..4235290 (+) 792 WP_342430625.1 DUF3388 domain-containing protein -
  NSS81_RS21300 (NSS81_21300) - 4235312..4236220 (+) 909 WP_342430626.1 RodZ domain-containing protein -
  NSS81_RS21305 (NSS81_21305) pgsA 4236274..4236852 (+) 579 WP_342430627.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS81_RS21310 (NSS81_21310) cinA 4236889..4238133 (+) 1245 WP_342430628.1 competence/damage-inducible protein A Machinery gene
  NSS81_RS21315 (NSS81_21315) recA 4238598..4239638 (+) 1041 WP_342430629.1 recombinase RecA Machinery gene
  NSS81_RS21320 (NSS81_21320) rny 4239946..4241505 (+) 1560 WP_342430630.1 ribonuclease Y -
  NSS81_RS21325 (NSS81_21325) - 4241619..4242416 (+) 798 WP_342430631.1 TIGR00282 family metallophosphoesterase -
  NSS81_RS21330 (NSS81_21330) spoVS 4242595..4242855 (+) 261 WP_342430632.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37561.99 Da        Isoelectric Point: 5.2127

>NTDB_id=981559 NSS81_RS21315 WP_342430629.1 4238598..4239638(+) (recA) [Neobacillus sp. FSL H8-0543]
MSDRKAALEMALKQIEKQFGKGSIMKMGEKTDTRILTSPSGSLALDAALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRIEVRRAEALKQGTDIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGSELEIVQKSGSWYSYNEERIGQGRENAKLFLRENPSIRLEIQTK
IREHFGLNGEKIVTETDEPDPFELVD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=981559 NSS81_RS21315 WP_342430629.1 4238598..4239638(+) (recA) [Neobacillus sp. FSL H8-0543]
GTGAGTGATCGTAAAGCGGCCTTAGAAATGGCGTTAAAACAGATTGAAAAGCAATTCGGAAAAGGCTCCATTATGAAAAT
GGGAGAGAAAACGGACACGAGGATTTTAACAAGTCCTAGTGGCTCGTTAGCGTTAGATGCAGCACTTGGAGTGGGTGGAT
ATCCAAAAGGACGGATTATCGAAATTTATGGCCCTGAAAGCTCAGGTAAAACAACTGTTGCCTTGCATGCTATTGCTGAA
GTACAGGCAAATGGCGGACAAGCTGCTTTTATTGATGCTGAGCATGCGCTTGACCCAGCTTATGCGCAAAAATTAGGGGT
GAACATTGATGAGTTATTGTTATCCCAGCCTGACACCGGGGAACAAGCACTAGAAATCGCTGAGGCGCTTGTTCGCAGTG
GTGCCATTGATATTTTGGTAGTTGACTCAGTTGCAGCACTAGTACCAAAAGCCGAAATTGAAGGGGAAATGGGAGATTCT
CACATGGGTCTTCAAGCTCGTTTGATGTCTCAAGCACTCCGGAAATTATCTGGTGTCATTAACAAATCGAAGACAATCGC
TATCTTTATCAACCAAATTCGTGAAAAAATTGGTGTCATGTTTGGTAATCCCGAAACAACCCCAGGTGGACGTGCGTTAA
AATTCTACTCAACGGTACGTATTGAAGTTCGTCGTGCAGAAGCGCTAAAGCAGGGAACAGATATTGTTGGAAACAAAACT
AAAATTAAAGTAGTGAAGAATAAAGTTGCACCTCCTTTCCGTACAGCTGAAGTGGATATTATGTATGGCGAAGGTATCTC
TAAGGAAGGCGAGATTGTTGATATTGGCTCCGAATTAGAAATTGTACAAAAAAGTGGTTCTTGGTATTCTTATAATGAGG
AAAGAATAGGCCAAGGCCGTGAAAATGCCAAACTATTCTTAAGAGAAAATCCAAGCATTCGCCTTGAAATTCAGACGAAA
ATCCGTGAACACTTTGGTTTAAATGGTGAAAAAATAGTTACAGAAACAGATGAGCCAGATCCATTTGAATTAGTAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.486

96.243

0.832
  recA Latilactobacillus sakei subsp. sakei 23K

73.591

97.399

0.717
  recA Streptococcus pneumoniae R6

65.915

100

0.676
  recA Streptococcus pneumoniae Rx1

65.915

100

0.676
  recA Streptococcus pneumoniae D39

65.915

100

0.676
  recA Streptococcus pneumoniae TIGR4

65.915

100

0.676
  recA Streptococcus mitis NCTC 12261

68.452

97.11

0.665
  recA Streptococcus mitis SK321

68.485

95.376

0.653
  recA Streptococcus mutans UA159

68.693

95.087

0.653
  recA Neisseria gonorrhoeae strain FA1090

64.928

99.711

0.647
  recA Neisseria gonorrhoeae MS11

64.928

99.711

0.647
  recA Neisseria gonorrhoeae MS11

64.928

99.711

0.647
  recA Streptococcus pyogenes NZ131

68.293

94.798

0.647
  recA Lactococcus lactis subsp. cremoris KW2

65.152

95.376

0.621
  recA Helicobacter pylori strain NCTC11637

63.609

97.688

0.621
  recA Helicobacter pylori 26695

63.314

97.688

0.619
  recA Acinetobacter baylyi ADP1

61.494

100

0.618
  recA Ralstonia pseudosolanacearum GMI1000

65.741

93.642

0.616
  recA Vibrio cholerae strain A1552

62.798

97.11

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.798

97.11

0.61
  recA Acinetobacter baumannii D1279779

61.877

98.555

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

95.087

0.598
  recA Glaesserella parasuis strain SC1401

60.526

98.844

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.424

97.399

0.598
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.486

0.561

Multiple sequence alignment