Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSS81_RS21310 Genome accession   NZ_CP151943
Coordinates   4236889..4238133 (+) Length   414 a.a.
NCBI ID   WP_342430628.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4231889..4243133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS21285 (NSS81_21285) - 4233256..4233978 (+) 723 WP_342430623.1 SDR family oxidoreductase -
  NSS81_RS21290 (NSS81_21290) - 4234061..4234318 (+) 258 WP_342430624.1 DUF3243 domain-containing protein -
  NSS81_RS21295 (NSS81_21295) - 4234499..4235290 (+) 792 WP_342430625.1 DUF3388 domain-containing protein -
  NSS81_RS21300 (NSS81_21300) - 4235312..4236220 (+) 909 WP_342430626.1 RodZ domain-containing protein -
  NSS81_RS21305 (NSS81_21305) pgsA 4236274..4236852 (+) 579 WP_342430627.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS81_RS21310 (NSS81_21310) cinA 4236889..4238133 (+) 1245 WP_342430628.1 competence/damage-inducible protein A Machinery gene
  NSS81_RS21315 (NSS81_21315) recA 4238598..4239638 (+) 1041 WP_342430629.1 recombinase RecA Machinery gene
  NSS81_RS21320 (NSS81_21320) rny 4239946..4241505 (+) 1560 WP_342430630.1 ribonuclease Y -
  NSS81_RS21325 (NSS81_21325) - 4241619..4242416 (+) 798 WP_342430631.1 TIGR00282 family metallophosphoesterase -
  NSS81_RS21330 (NSS81_21330) spoVS 4242595..4242855 (+) 261 WP_342430632.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45063.82 Da        Isoelectric Point: 5.7683

>NTDB_id=981558 NSS81_RS21310 WP_342430628.1 4236889..4238133(+) (cinA) [Neobacillus sp. FSL H8-0543]
MNAEIIAVGSELLLGQIVNTNAKFLSQQLAGLGINVYYHTVVGDNSNRLKSVIEIAEKRSNLIIFTGGLGPTKDDLTKET
IAGYIGKKLVMDPVALESIEDFFYKTNRVMTENNRKQALVFEGSHILPNHNGMAPGMVTENEKHLYMLLPGPPKEMEPMF
LDFGIAALSRYVKTEEKIVSRVLRFFGIGEAALETEIVDIIDQQSNPTIAPLASDGEVTLRLTAKHKDPLTANSMLDEAE
NAIRSRVGEYLYGYDNTSIVEELVKVLKGKKLTIAAAESLTGGMFQQGLTSFAGASTFVSGGVVCYTNEVKHKVLKVKEE
TIEKYGVVSDECAKELAENVAALLSSDIGISFTGVAGPDELEGKPAGTVYIGLSINGRQTVVKKLVLGGTREANRSRTVK
FGCYYLIKLLKESQ

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=981558 NSS81_RS21310 WP_342430628.1 4236889..4238133(+) (cinA) [Neobacillus sp. FSL H8-0543]
ATGAATGCGGAAATTATTGCAGTGGGTTCAGAATTGCTGCTCGGTCAAATTGTTAATACCAATGCAAAATTTTTATCCCA
GCAACTAGCAGGTCTTGGTATTAATGTTTATTATCATACAGTCGTTGGTGATAATTCCAATCGATTAAAGTCTGTAATTG
AAATTGCTGAAAAACGATCAAATTTAATTATTTTTACTGGTGGTCTTGGACCTACCAAAGATGATTTAACGAAAGAAACG
ATCGCTGGATATATAGGGAAAAAGCTTGTAATGGATCCTGTTGCCTTAGAGTCAATAGAGGACTTCTTTTATAAGACAAA
TCGGGTAATGACGGAAAATAACCGTAAACAAGCATTGGTCTTTGAAGGGTCCCATATTCTGCCAAACCATAATGGGATGG
CCCCTGGTATGGTCACAGAAAATGAAAAGCATCTTTATATGCTTCTACCAGGACCACCTAAAGAAATGGAGCCGATGTTT
TTAGATTTCGGCATTGCTGCCCTATCCAGGTATGTAAAAACTGAAGAAAAAATTGTCTCTAGAGTATTAAGATTCTTTGG
AATCGGTGAAGCAGCCTTGGAAACAGAAATTGTCGACATAATTGATCAACAAAGTAATCCGACCATTGCTCCACTTGCCT
CTGATGGTGAGGTCACCTTACGATTGACTGCAAAACATAAAGATCCTCTTACTGCTAATTCAATGCTCGATGAAGCAGAA
AATGCAATCAGATCACGTGTGGGTGAGTATTTATATGGGTATGACAACACCTCAATTGTCGAAGAGTTAGTTAAAGTCTT
AAAAGGGAAAAAATTAACGATTGCCGCTGCTGAAAGTCTGACTGGGGGCATGTTTCAGCAAGGGTTAACGAGCTTTGCTG
GTGCAAGCACATTTGTTAGCGGTGGTGTTGTTTGCTATACCAATGAGGTCAAACATAAAGTATTGAAGGTTAAAGAAGAG
ACGATTGAAAAATATGGGGTTGTAAGTGATGAGTGTGCCAAAGAGCTAGCGGAAAATGTTGCAGCACTCCTTTCTTCTGA
CATTGGTATTAGTTTCACAGGTGTTGCTGGACCTGATGAACTTGAGGGGAAACCAGCAGGAACCGTCTATATCGGACTTT
CGATTAATGGCAGACAAACCGTTGTGAAAAAATTAGTACTTGGCGGAACAAGAGAAGCCAACCGCAGTCGTACAGTAAAA
TTTGGATGCTACTATTTAATCAAACTCTTAAAAGAGTCACAGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.488

99.034

0.599
  cinA Streptococcus mitis SK321

47.482

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.242

100

0.476
  cinA Streptococcus pneumoniae TIGR4

47.002

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.763

100

0.471
  cinA Streptococcus pneumoniae R6

46.763

100

0.471
  cinA Streptococcus pneumoniae D39

46.523

100

0.469
  cinA Streptococcus mutans UA159

47.87

96.377

0.461
  cinA Streptococcus suis isolate S10

40.741

91.304

0.372

Multiple sequence alignment