Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAFX31_RS12975 Genome accession   NZ_CP151941
Coordinates   1081137..1082177 (-) Length   346 a.a.
NCBI ID   WP_411062156.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1076137..1087177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS12955 (AAFX31_12965) - 1078234..1078722 (-) 489 WP_116871672.1 hypothetical protein -
  AAFX31_RS12960 (AAFX31_12970) tpx 1078906..1079412 (-) 507 WP_171731446.1 thiol peroxidase -
  AAFX31_RS12965 (AAFX31_12975) - 1079577..1079855 (-) 279 WP_411062155.1 hypothetical protein -
  AAFX31_RS12970 (AAFX31_12980) - 1080086..1080973 (+) 888 WP_116871669.1 transcriptional regulator -
  AAFX31_RS12975 (AAFX31_12985) recA 1081137..1082177 (-) 1041 WP_411062156.1 recombinase RecA Machinery gene
  AAFX31_RS12980 (AAFX31_12990) pncC 1082319..1082813 (-) 495 WP_411062157.1 nicotinamide-nucleotide amidase -
  AAFX31_RS12985 (AAFX31_12995) mutS 1082938..1085499 (+) 2562 WP_186171239.1 DNA mismatch repair protein MutS -
  AAFX31_RS12990 (AAFX31_13000) rpoS 1085607..1086587 (-) 981 WP_008221135.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37499.04 Da        Isoelectric Point: 4.8285

>NTDB_id=981402 AAFX31_RS12975 WP_411062156.1 1081137..1082177(-) (recA) [Vibrio chagasii strain TBV018]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKNKLVDKAGAWYSYKGDKIGQGKSNSCKFLRENPEIALELDT
KLRDLLLIPAVLEEKEAEKEEENEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=981402 AAFX31_RS12975 WP_411062156.1 1081137..1082177(-) (recA) [Vibrio chagasii strain TBV018]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAACAATTTGGTAAAGGCTCTATCATGCG
TCTTGGTGACAACCGCACAATGGATGTAGAAACAATTTCTACTGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GTCTACCGATGGGTCGCATCGTTGAAATCTATGGTCCAGAATCTTCAGGTAAAACAACGCTAACCCTTGAGCTGATTGCT
GCAGCACAAAAAGTAGGTAAAACTTGTGCTTTCGTTGATGCTGAGCACGCACTAGACCCAATCTACGCTCAAAAGCTTGG
TGTTGATATCGATGCACTTCTTGTTTCTCAACCAGATACTGGTGAACAAGCTCTAGAAATCTGTGATGCGCTAGCGCGTT
CTGGTGCTATCGACGTATTGGTTGTCGACTCAGTAGCAGCACTAACACCAAAAGCTGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTGACTGGTAACCTTAAGCAGTCTAACTGTAT
GTGTATCTTCATTAACCAAATCCGTATGAAGATTGGTGTAATGTTTGGTAACCCAGAAACAACAACGGGTGGTAACGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGCTCTATCAAAGAAGGTGACGAGATCGTTGGTAACGAA
ACGCGCATTAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAACAAGCTGAAACTCAAATCCTATACGGCCAAGGCTT
TAACCGCGAAGGTGAGCTGATTGACCTAGGTGTTAAGAACAAGCTAGTTGATAAAGCAGGCGCTTGGTACAGCTACAAAG
GCGATAAGATCGGTCAGGGTAAATCGAACTCTTGTAAGTTCCTACGTGAAAACCCAGAGATCGCTCTAGAGCTAGATACT
AAACTTCGTGACTTGCTACTGATTCCTGCTGTTTTAGAAGAGAAAGAAGCAGAAAAAGAAGAAGAGAACGAAGAGTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

90.274

95.087

0.858
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.274

95.087

0.858
  recA Acinetobacter baylyi ADP1

72.174

99.711

0.72
  recA Acinetobacter baumannii D1279779

72.807

98.844

0.72
  recA Pseudomonas stutzeri DSM 10701

75

94.798

0.711
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae strain FA1090

66.954

100

0.673
  recA Glaesserella parasuis strain SC1401

71.296

93.642

0.668
  recA Ralstonia pseudosolanacearum GMI1000

68.598

94.798

0.65
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

99.133

0.613
  recA Streptococcus mutans UA159

58.739

100

0.592
  recA Helicobacter pylori 26695

61.538

93.931

0.578
  recA Helicobacter pylori strain NCTC11637

61.231

93.931

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

92.775

0.575
  recA Streptococcus pneumoniae Rx1

61.61

93.353

0.575
  recA Streptococcus pneumoniae TIGR4

61.61

93.353

0.575
  recA Streptococcus pneumoniae R6

61.61

93.353

0.575
  recA Streptococcus pneumoniae D39

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

98.266

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Streptococcus mitis SK321

60.991

93.353

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

92.775

0.564
  recA Streptococcus pyogenes NZ131

59.692

93.931

0.561
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.353

0.543

Multiple sequence alignment