Detailed information NTG0981404

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAFX31_RS12990
• Genome accession: NZ_CP151941
• Coordinates: 1085607..1086587 (-)
• Length: 326 a.a.
• NCBI ID: WP_008221135.1
• Uniprot ID: A0A7Y4CU47
• Organism: Vibrio chagasii strain TBV018
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1080607..1091587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX31_RS12975 (AAFX31_12985)	recA	1081137..1082177 (-)	1041	WP_411062156.1	recombinase RecA	Machinery gene
AAFX31_RS12980 (AAFX31_12990)	pncC	1082319..1082813 (-)	495	WP_411062157.1	nicotinamide-nucleotide amidase	-
AAFX31_RS12985 (AAFX31_12995)	mutS	1082938..1085499 (+)	2562	WP_186171239.1	DNA mismatch repair protein MutS	-
AAFX31_RS12990 (AAFX31_13000)	rpoS	1085607..1086587 (-)	981	WP_008221135.1	RNA polymerase sigma factor RpoS	Regulator
AAFX31_RS12995 (AAFX31_13005)	nlpD	1086686..1087600 (-)	915	WP_105057594.1	murein hydrolase activator NlpD	-
AAFX31_RS13000 (AAFX31_13010)	-	1087635..1088261 (-)	627	WP_105025545.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAFX31_RS13005 (AAFX31_13015)	surE	1088262..1089005 (-)	744	WP_105057595.1	5'/3'-nucleotidase SurE	-
AAFX31_RS13010 (AAFX31_13020)	truD	1089083..1090129 (-)	1047	WP_171731448.1	tRNA pseudouridine(13) synthase TruD	-
AAFX31_RS13015 (AAFX31_13025)	ispF	1090152..1090631 (-)	480	WP_004739053.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAFX31_RS13020 (AAFX31_13030)	ispD	1090634..1091335 (-)	702	WP_102424617.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37308.46 Da
• Isoelectric Point: 4.9721

>NTDB_id=981404 AAFX31_RS12990 WP_008221135.1 1085607..1086587(-) (rpoS) [Vibrio chagasii strain TBV018]
MSISNAVTKEEFDLDQVTTESEILEQGKRTATKKAEVKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=981404 AAFX31_RS12990 WP_008221135.1 1085607..1086587(-) (rpoS) [Vibrio chagasii strain TBV018]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGTAACCACGGAATCGGAAATACTTGAGCAAGG
GAAGCGAACAGCTACTAAGAAAGCCGAAGTTAAAGAAGAAACTGAAGTTACTTCTAAGAGTTTAGATGCGACGCAACTGT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAGGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTAGTGAAAATTTCCCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAGCGTGGCTTCC
GTTTTTCTACTTACGCGACATGGTGGATTCGTCAGACCATAGAGCGTGCCTTGATGAATCAGACTCGCACTATCCGTTTG
CCTATTCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAACTATCACAAAAGCTTGACCACGAACCAAC
AGCTGAAGAGATCGCTTCTAAGCTAGATAAGCCGGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGATGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCTGACCCTGAG
GTTTCAACTCAAGACAGTGATATCAAGAACTCACTGATCTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAAGTGCT
TGCACGTCGATTTGGACTACTAGGTTATGAACCGTCAACACTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTGCGTCGCCTACGTGAGATCCTAATCAAGCAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A7Y4CU47

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.335	100	0.844