Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   AAEO79_RS00545 Genome accession   NZ_CP151540
Coordinates   110076..111125 (+) Length   349 a.a.
NCBI ID   WP_379946270.1    Uniprot ID   -
Organism   Enterococcus devriesei strain Ed-CK-24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 105076..116125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO79_RS00525 (AAEO79_00525) ymfI 106065..106790 (+) 726 WP_379946268.1 elongation factor P 5-aminopentanone reductase -
  AAEO79_RS00530 (AAEO79_00530) - 106926..107792 (+) 867 WP_071861766.1 RodZ domain-containing protein -
  AAEO79_RS00535 (AAEO79_00535) pgsA 107827..108408 (+) 582 WP_071861765.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAEO79_RS00540 (AAEO79_00540) cinA 108540..109787 (+) 1248 WP_379946269.1 competence/damage-inducible protein A Machinery gene
  AAEO79_RS00545 (AAEO79_00545) recA 110076..111125 (+) 1050 WP_379946270.1 recombinase RecA Machinery gene
  AAEO79_RS00550 (AAEO79_00550) rny 111377..112933 (+) 1557 WP_071861762.1 ribonuclease Y -
  AAEO79_RS00555 (AAEO79_00555) mprF 113362..115923 (+) 2562 WP_379946271.1 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37502.64 Da        Isoelectric Point: 4.8368

>NTDB_id=979009 AAEO79_RS00545 WP_379946270.1 110076..111125(+) (recA) [Enterococcus devriesei strain Ed-CK-24]
MTNDRKAALDAAMKKIEKNYGKGSIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNR
TKIKVVKNKVAPPFKVAEVDLMYGRGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGRENAKKYLADHPEMMAEVDT
RVRAAYGIGEAGEAAEADEAGQEELPLDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=979009 AAEO79_RS00545 WP_379946270.1 110076..111125(+) (recA) [Enterococcus devriesei strain Ed-CK-24]
TTGACAAATGATCGCAAGGCGGCTTTAGATGCTGCAATGAAGAAGATTGAAAAGAACTATGGAAAAGGCTCGATCATGAA
ATTAGGTGAAAAGGTTGATCAACAGATTTCAACGATCCCAAGTGGTTCTTTAGCATTAGATGTAGCATTAGGTGTCGGTG
GATATCCACGAGGACGGATCATTGAAGTCTATGGACCAGAAAGTTCTGGTAAAACAACGGTTGCCTTACATGCTATCGCA
GAAGTACAAAAACAAGGCGGTACAGCAGCTTTTATTGATGCTGAGCATGCGTTAGACCCACAATATGCGCAACGTCTAGG
TGTTAATATTGACGAACTATTGCTTTCACAGCCAGATACTGGTGAGCAAGGGTTAGAAATCGCTGATGCATTGGTTTCTA
GTGGTGCTGTTGATATCATCGTTATCGACTCTGTAGCAGCGTTGGTTCCTCGGGCTGAAATCGATGGCGAAATGGGTGAC
GCCCACGTTGGTTTACAAGCACGTCTGATGTCACAGGCATTGCGTAAATTATCTGGTTCTATCAATAAGACGAAGACGAT
TGCGGTCTTCATCAACCAAATTCGGGAAAAAGTCGGCGTAATGTTCGGTAACCCAGAAGTAACTCCTGGTGGACGTGCGT
TGAAGTTCTACGCGACTGTACGGTTAGAGGTCCGTCGTGCGGAACAATTGAAAAACGGTACAGATATTGTTGGTAACCGG
ACGAAGATCAAAGTCGTGAAAAACAAAGTAGCTCCTCCTTTTAAGGTGGCTGAAGTGGATCTGATGTATGGCCGGGGAAT
TTCACAAGAAGGCGAACTCTTAGATATGGCTGTAGAGCAAGATATCATCGACAAGAGCGGTGCTTGGTATGGCTACAAAG
AAGATCGGATCGGTCAAGGTCGTGAAAATGCGAAGAAATATTTAGCGGACCATCCAGAAATGATGGCTGAAGTCGATACA
CGTGTGCGGGCTGCTTACGGTATCGGTGAAGCAGGTGAAGCGGCTGAGGCAGACGAAGCAGGACAAGAAGAACTGCCATT
AGACGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.539

99.427

0.791

  recA Bacillus subtilis subsp. subtilis str. 168

76.667

94.556

0.725

  recA Streptococcus mitis SK321

69.101

100

0.705

  recA Streptococcus mitis NCTC 12261

68.82

100

0.702

  recA Streptococcus pneumoniae Rx1

67.778

100

0.699

  recA Streptococcus pneumoniae D39

67.778

100

0.699

  recA Streptococcus pneumoniae R6

67.778

100

0.699

  recA Streptococcus pneumoniae TIGR4

67.778

100

0.699

  recA Streptococcus pyogenes NZ131

69.909

94.269

0.659

  recA Streptococcus mutans UA159

66.282

99.427

0.659

  recA Lactococcus lactis subsp. cremoris KW2

67.262

96.275

0.648

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.696

0.582

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.118

97.421

0.576

  recA Ralstonia pseudosolanacearum GMI1000

62.037

92.837

0.576

  recA Neisseria gonorrhoeae MS11

61.094

94.269

0.576

  recA Neisseria gonorrhoeae MS11

61.094

94.269

0.576

  recA Neisseria gonorrhoeae strain FA1090

61.094

94.269

0.576

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

92.55

0.57

  recA Vibrio cholerae strain A1552

60.991

92.55

0.564

  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

92.55

0.564

  recA Acinetobacter baylyi ADP1

57.434

98.281

0.564

  recA Pseudomonas stutzeri DSM 10701

60.802

92.837

0.564

  recA Glaesserella parasuis strain SC1401

61.755

91.404

0.564

  recA Acinetobacter baumannii D1279779

60.372

92.55

0.559

  recA Helicobacter pylori 26695

57.927

93.983

0.544

  recA Helicobacter pylori strain NCTC11637

57.927

93.983

0.544


Multiple sequence alignment