Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAEO79_RS00540 Genome accession   NZ_CP151540
Coordinates   108540..109787 (+) Length   415 a.a.
NCBI ID   WP_379946269.1    Uniprot ID   -
Organism   Enterococcus devriesei strain Ed-CK-24     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103540..114787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO79_RS00520 (AAEO79_00520) yfmH 104771..106063 (+) 1293 WP_379946267.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AAEO79_RS00525 (AAEO79_00525) ymfI 106065..106790 (+) 726 WP_379946268.1 elongation factor P 5-aminopentanone reductase -
  AAEO79_RS00530 (AAEO79_00530) - 106926..107792 (+) 867 WP_071861766.1 RodZ domain-containing protein -
  AAEO79_RS00535 (AAEO79_00535) pgsA 107827..108408 (+) 582 WP_071861765.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAEO79_RS00540 (AAEO79_00540) cinA 108540..109787 (+) 1248 WP_379946269.1 competence/damage-inducible protein A Machinery gene
  AAEO79_RS00545 (AAEO79_00545) recA 110076..111125 (+) 1050 WP_379946270.1 recombinase RecA Machinery gene
  AAEO79_RS00550 (AAEO79_00550) rny 111377..112933 (+) 1557 WP_071861762.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45161.60 Da        Isoelectric Point: 4.7474

>NTDB_id=979008 AAEO79_RS00540 WP_379946269.1 108540..109787(+) (cinA) [Enterococcus devriesei strain Ed-CK-24]
MKAEIIAVGTELLLGQVVNTNATFLSEKLADMGIEVYFHTVVGDNPKRLEELLQLADSRSDLILLCGGLGPTDDDLTKNV
LADHVGVPLVQNEAGLAALNAFFAQRQSTMTPNNLRQIETLQDGIPLPNRTGLAIGCLYKGTKNNYILLPGPPSELKPMF
LEQARPLLEKEFPTTEKLTSRVLRFFGIGESKLVTDLAEMIEHQSNPTIAPYAKPNEVTLRITAKTEDERSANALLDQTE
AEILAKVGEFFYGYGEENSLVEVVVELLKKKKMTITAAESLTAGEFQATLGTISGVSEVFPGGFITYSKATKVSFLGLDP
EHLEQTGVVSEDCAKEMAEAALRLAGTDYALSFTGVAGPDELEGQPKGTVYIGLAQKNGPTVVTENHFTRDRSYVRHSSV
MKGLDMLRRAILNKN

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=979008 AAEO79_RS00540 WP_379946269.1 108540..109787(+) (cinA) [Enterococcus devriesei strain Ed-CK-24]
ATGAAAGCAGAGATCATTGCTGTAGGAACGGAACTTTTATTAGGACAAGTAGTCAATACGAACGCGACTTTTTTATCAGA
AAAATTAGCGGATATGGGGATCGAAGTCTATTTTCATACAGTCGTCGGTGATAACCCCAAACGTTTGGAGGAATTATTGC
AGTTGGCCGATTCACGCAGCGATTTGATTCTTTTATGCGGCGGCTTGGGACCAACCGATGATGACTTGACGAAAAATGTT
TTGGCTGATCACGTCGGCGTGCCGCTCGTGCAAAATGAAGCAGGCTTAGCAGCGTTAAACGCCTTTTTCGCACAGCGTCA
AAGTACGATGACACCGAATAATCTACGGCAAATCGAGACCCTGCAAGACGGGATTCCATTACCGAATCGGACGGGGCTAG
CCATTGGCTGTTTGTATAAAGGAACAAAGAACAATTATATTCTGTTACCCGGTCCACCTAGCGAATTGAAACCAATGTTT
TTGGAACAAGCGCGTCCGCTACTAGAAAAAGAATTTCCGACGACGGAAAAATTGACCTCACGCGTCCTACGTTTCTTTGG
TATCGGCGAATCAAAACTAGTGACGGATCTAGCAGAAATGATCGAACATCAATCCAATCCGACGATTGCTCCCTACGCCA
AACCCAATGAAGTCACGTTAAGAATCACAGCTAAGACGGAAGATGAACGCTCAGCGAACGCCTTATTGGATCAAACAGAA
GCAGAGATCCTAGCGAAGGTCGGCGAATTTTTCTATGGCTACGGCGAGGAAAATAGTTTGGTTGAAGTGGTCGTTGAACT
ATTGAAAAAGAAAAAAATGACGATTACGGCGGCAGAAAGTTTGACGGCGGGAGAGTTCCAAGCGACCTTAGGAACGATTT
CAGGCGTTTCAGAGGTCTTCCCAGGTGGTTTTATAACTTATTCCAAGGCGACGAAAGTAAGCTTCCTAGGGCTTGATCCT
GAGCATCTAGAGCAAACGGGTGTTGTTAGCGAGGACTGCGCGAAAGAAATGGCAGAAGCTGCGCTGCGTTTAGCTGGGAC
GGACTATGCCTTATCCTTTACGGGTGTTGCCGGTCCTGACGAATTAGAAGGGCAACCAAAGGGAACGGTTTATATTGGCT
TGGCGCAAAAAAATGGACCGACCGTAGTGACAGAAAATCACTTCACCAGAGATCGTTCTTATGTTCGTCACAGCTCCGTG
ATGAAGGGTTTAGACATGTTGCGGCGAGCAATTCTAAACAAAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

53.444

100

0.542
  cinA Streptococcus pneumoniae D39

53.444

100

0.542
  cinA Streptococcus pneumoniae TIGR4

53.444

100

0.542
  cinA Streptococcus pneumoniae Rx1

53.444

100

0.542
  cinA Streptococcus pneumoniae R6

53.444

100

0.542
  cinA Streptococcus mitis NCTC 12261

53.207

100

0.54
  cinA Streptococcus mutans UA159

52.404

100

0.525
  cinA Bacillus subtilis subsp. subtilis str. 168

47.942

99.518

0.477
  cinA Streptococcus suis isolate S10

43.269

100

0.434

Multiple sequence alignment