Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AADV58_RS01940 Genome accession   NZ_CP151406
Coordinates   410847..411869 (+) Length   340 a.a.
NCBI ID   WP_028993839.1    Uniprot ID   -
Organism   Azonexus hydrophilus strain NCP973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 405847..416869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV58_RS01910 (AADV58_01910) - 406198..406836 (-) 639 WP_028993845.1 thioesterase domain-containing protein -
  AADV58_RS01915 (AADV58_01915) - 406833..407141 (-) 309 WP_028993844.1 NAD(P)H-dependent oxidoreductase subunit E -
  AADV58_RS01920 (AADV58_01920) - 407184..408257 (-) 1074 WP_341743937.1 VanZ family protein -
  AADV58_RS01925 (AADV58_01925) - 408289..409707 (-) 1419 WP_341743938.1 sodium:solute symporter family protein -
  AADV58_RS01930 (AADV58_01930) - 409750..410430 (-) 681 WP_341743939.1 pseudouridine synthase -
  AADV58_RS01935 (AADV58_01935) - 410431..410634 (-) 204 WP_028993840.1 hypothetical protein -
  AADV58_RS01940 (AADV58_01940) recA 410847..411869 (+) 1023 WP_028993839.1 recombinase RecA Machinery gene
  AADV58_RS01945 (AADV58_01945) recX 411862..412296 (+) 435 WP_341743940.1 recombination regulator RecX -
  AADV58_RS01950 (AADV58_01950) lptB 412293..413027 (+) 735 WP_028993837.1 LPS export ABC transporter ATP-binding protein -
  AADV58_RS01955 (AADV58_01955) rpoN/rpoN1 413052..414506 (+) 1455 WP_028993836.1 RNA polymerase factor sigma-54 Machinery gene
  AADV58_RS01960 (AADV58_01960) raiA 414521..414844 (+) 324 WP_028993835.1 ribosome-associated translation inhibitor RaiA -
  AADV58_RS01965 (AADV58_01965) ptsN 414896..415345 (+) 450 WP_028993834.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AADV58_RS01970 (AADV58_01970) hprK 415354..416289 (+) 936 WP_028993833.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36337.79 Da        Isoelectric Point: 6.1686

>NTDB_id=976433 AADV58_RS01940 WP_028993839.1 410847..411869(+) (recA) [Azonexus hydrophilus strain NCP973]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVGELLISQPDTGEQALEIADMLVRSGSVDIIVVDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGDEVVGS
ETRVKVVKNKVSPPFREAIFDILYGEGISREGEIVEMGVAHKLVDKSGAWYSYKGEKIGQGKDNSREFLKSHPEIAQEIE
AGIREAASTTVIKPSKAANG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=976433 AADV58_RS01940 WP_028993839.1 410847..411869(+) (recA) [Azonexus hydrophilus strain NCP973]
ATGGACGACAACAAGGCAAAGGCGCTCGCCGCAGCGCTGCAACAGATCGAAAAGCAGTTCGGCAAGGGCTCCATCATGAA
GATGGGCGATGCCGAAATCGACGAGGGCATCCAGGTCGTGTCGACCGGTTCGCTCGGCCTCGACATCGCACTCGGCGTCG
GCGGCCTGCCGCGCGGCCGGGTGGTCGAAATCTACGGCCCGGAATCGTCGGGCAAGACCACGCTCTGTCTGCAGGTCGTT
GCCGAAATGCAGAAGCTTGGCGGTACCGCTGCCTTCATCGATGCCGAACATGCGCTCGATCCGCAATACGCCCAGAAACT
CGGTGTCAATGTCGGCGAACTGCTGATCTCGCAGCCCGATACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTCC
GTTCCGGCTCGGTCGACATCATCGTCGTCGACTCCGTGGCCGCGCTCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGC
GATCAGATGGTCGGCCTGCACGCCCGTCTGATGTCGCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAAAACCAACAC
GCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCTCGCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGCATCGGCGGGATCAAGAAGGGCGACGAGGTGGTCGGTAGC
GAAACCCGTGTCAAGGTGGTCAAGAACAAGGTTTCCCCGCCCTTCCGCGAAGCCATCTTCGACATCCTCTACGGCGAAGG
GATTTCCCGCGAGGGCGAGATCGTCGAAATGGGCGTCGCCCACAAGCTGGTCGACAAATCCGGCGCCTGGTATTCGTACA
AGGGCGAGAAGATCGGCCAGGGCAAAGACAATTCCCGCGAATTCCTCAAGTCGCACCCGGAAATCGCCCAGGAAATTGAA
GCCGGCATCCGCGAAGCGGCGAGCACCACCGTGATCAAGCCGAGCAAGGCCGCCAATGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.222

92.647

0.762
  recA Pseudomonas stutzeri DSM 10701

75.309

95.294

0.718
  recA Neisseria gonorrhoeae MS11

75

95.294

0.715
  recA Neisseria gonorrhoeae MS11

75

95.294

0.715
  recA Neisseria gonorrhoeae strain FA1090

75

95.294

0.715
  recA Acinetobacter baylyi ADP1

72.615

95.588

0.694
  recA Glaesserella parasuis strain SC1401

71.125

96.765

0.688
  recA Acinetobacter baumannii D1279779

70.909

97.059

0.688
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.462

95.588

0.674
  recA Vibrio cholerae strain A1552

70.462

95.588

0.674
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

96.765

0.641
  recA Bacillus subtilis subsp. subtilis str. 168

65.846

95.588

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

96.176

0.626
  recA Latilactobacillus sakei subsp. sakei 23K

63.58

95.294

0.606
  recA Helicobacter pylori strain NCTC11637

62.691

96.176

0.603
  recA Helicobacter pylori 26695

62.691

96.176

0.603
  recA Streptococcus pneumoniae R6

62.963

95.294

0.6
  recA Streptococcus pneumoniae Rx1

62.963

95.294

0.6
  recA Streptococcus pneumoniae D39

62.963

95.294

0.6
  recA Streptococcus pneumoniae TIGR4

62.963

95.294

0.6
  recA Streptococcus mitis NCTC 12261

62.346

95.294

0.594
  recA Streptococcus mitis SK321

62.037

95.294

0.591
  recA Streptococcus mutans UA159

61.656

95.882

0.591
  recA Streptococcus pyogenes NZ131

60.736

95.882

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

92.941

0.579
  recA Lactococcus lactis subsp. cremoris KW2

60.185

95.294

0.574

Multiple sequence alignment