Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R8775_RS09130 Genome accession   NZ_AP026915
Coordinates   1749107..1750273 (-) Length   388 a.a.
NCBI ID   WP_317680923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1744107..1755273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS09105 (PC0005_17800) - 1744426..1744851 (-) 426 WP_000204067.1 hypothetical protein -
  R8775_RS09110 (PC0005_17810) - 1744980..1745591 (-) 612 WP_224757307.1 ImmA/IrrE family metallo-endopeptidase -
  R8775_RS09115 (PC0005_17820) - 1745578..1745739 (-) 162 WP_000289348.1 helix-turn-helix domain-containing protein -
  R8775_RS09120 (PC0005_17830) lytA 1746098..1747054 (-) 957 WP_000405236.1 N-acetylmuramoyl-L-alanine amidase LytA -
  R8775_RS09125 (PC0005_17840) - 1747430..1748800 (-) 1371 WP_001036282.1 MATE family efflux transporter -
  R8775_RS09130 (PC0005_17850) recA 1749107..1750273 (-) 1167 WP_317680923.1 recombinase RecA Machinery gene
  R8775_RS09135 (PC0005_17860) cinA 1750328..1751584 (-) 1257 WP_000642707.1 competence/damage-inducible protein A Machinery gene
  R8775_RS09140 (PC0005_17870) brpA 1751668..1752684 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  R8775_RS09145 (PC0005_17880) - 1752692..1753210 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  R8775_RS09150 (PC0005_17890) tsaE 1753200..1753643 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  R8775_RS09155 (PC0005_17900) comM 1753729..1754349 (-) 621 WP_000839908.1 hypothetical protein Regulator
  R8775_RS09160 (PC0005_17910) - 1754732..1755190 (-) 459 Protein_1796 transcriptional regulator -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41923.74 Da        Isoelectric Point: 4.8403

>NTDB_id=97586 R8775_RS09130 WP_317680923.1 1749107..1750273(-) (recA) [Streptococcus pneumoniae strain PZ900700005]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKEAKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=97586 R8775_RS09130 WP_317680923.1 1749107..1750273(-) (recA) [Streptococcus pneumoniae strain PZ900700005]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAGCTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTACGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

99.485

100

0.995
  recA Streptococcus pneumoniae D39

99.485

100

0.995
  recA Streptococcus pneumoniae R6

99.485

100

0.995
  recA Streptococcus pneumoniae TIGR4

99.485

100

0.995
  recA Streptococcus mitis NCTC 12261

94.072

100

0.941
  recA Streptococcus mitis SK321

93.557

100

0.936
  recA Streptococcus mutans UA159

82.946

99.742

0.827
  recA Streptococcus pyogenes NZ131

90.435

88.918

0.804
  recA Lactococcus lactis subsp. cremoris KW2

78.125

90.722

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

68.208

89.175

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Glaesserella parasuis strain SC1401

57.373

96.134

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Neisseria gonorrhoeae MS11

59.882

87.371

0.523
  recA Neisseria gonorrhoeae strain FA1090

59.882

87.371

0.523
  recA Neisseria gonorrhoeae MS11

59.882

87.371

0.523
  recA Vibrio cholerae strain A1552

62.539

83.247

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

83.247

0.521
  recA Acinetobacter baumannii D1279779

61.656

84.021

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

85.309

0.515
  recA Acinetobacter baylyi ADP1

61.043

84.021

0.513
  recA Helicobacter pylori strain NCTC11637

56.41

90.464

0.51
  recA Helicobacter pylori 26695

56.41

90.464

0.51
  recA Pseudomonas stutzeri DSM 10701

59.202

84.021

0.497
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.701

0.487

Multiple sequence alignment