Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WIF35_RS11580 Genome accession   NZ_CP150631
Coordinates   2369122..2370153 (-) Length   343 a.a.
NCBI ID   WP_412478369.1    Uniprot ID   -
Organism   Azonexus sp. IMCC34839     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2364122..2375153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIF35_RS11545 - 2364390..2364647 (-) 258 WP_412478362.1 hypothetical protein -
  WIF35_RS11550 hprK 2364698..2365633 (-) 936 WP_412478363.1 HPr(Ser) kinase/phosphatase -
  WIF35_RS11555 ptsN 2365641..2366087 (-) 447 WP_412478364.1 PTS IIA-like nitrogen regulatory protein PtsN -
  WIF35_RS11560 hpf 2366145..2366465 (-) 321 WP_412478365.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  WIF35_RS11565 rpoN/rpoN1 2366478..2367941 (-) 1464 WP_412478366.1 RNA polymerase factor sigma-54 Machinery gene
  WIF35_RS11570 lptB 2367970..2368701 (-) 732 WP_412478367.1 LPS export ABC transporter ATP-binding protein -
  WIF35_RS11575 recX 2368698..2369129 (-) 432 WP_412478368.1 recombination regulator RecX -
  WIF35_RS11580 recA 2369122..2370153 (-) 1032 WP_412478369.1 recombinase RecA Machinery gene
  WIF35_RS11585 - 2370343..2370543 (+) 201 WP_412478370.1 hypothetical protein -
  WIF35_RS11590 - 2370540..2371187 (+) 648 WP_412478371.1 RluA family pseudouridine synthase -
  WIF35_RS11595 - 2371258..2372754 (+) 1497 WP_412478372.1 sodium:solute symporter family protein -
  WIF35_RS11600 - 2372815..2373870 (+) 1056 WP_412478373.1 VanZ family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36565.18 Da        Isoelectric Point: 6.3026

>NTDB_id=970728 WIF35_RS11580 WP_412478369.1 2369122..2370153(-) (recA) [Azonexus sp. IMCC34839]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTGEQALEIADMLVRSGSVDIIIVDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGS
ETKVKVVKNKVSPPFREAIFDILYGEGISRQGEIVEMGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLKANPEIAAEIE
AGIREAASTNVIKPVKAAKAADA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=970728 WIF35_RS11580 WP_412478369.1 2369122..2370153(-) (recA) [Azonexus sp. IMCC34839]
ATGGACGACAACAAGGCAAAGGCGCTCGCCGCAGCGCTGCAACAGATCGAGAAGCAATTCGGCAAAGGCTCCATCATGAA
GATGGGCGATGCCGAGATCGACGAAGGCATCCAGGTCGTGTCCACCGGTTCGCTCGGTCTGGACATCGCGCTCGGCGTCG
GCGGTTTGCCGCGCGGCCGCGTCGTTGAAATCTACGGTCCGGAATCCTCCGGCAAGACCACGCTCTGTCTGCAGGTCGTC
GCCGAAATGCAGAAGCTGGGCGGCACCGCGGCCTTCATCGACGCCGAACACGCGCTCGATCCGCAATACGCCCAGAAGCT
CGGCGTCAATGTTTCCGACCTGCTGATCTCGCAGCCGGATACCGGCGAACAGGCCCTTGAAATCGCCGACATGCTGGTCC
GCTCCGGCTCGGTCGACATCATCATCGTCGACTCCGTGGCTGCCCTCACCCCACGCGCCGAAATTGAAGGCGAGATGGGC
GACCAGATGGTCGGCCTGCATGCCCGCCTGATGTCCCAGGCCCTGCGCAAGCTGACGGCCAATATCAAGAAGACCAACAC
CCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCTCGCCGGAAACCACCACCGGCGGCAACG
CGCTGAAGTTTTACGCTTCCGTTCGCCTCGACATCCGCCGCATCGGTTCGATCAAGAAGGGCGATGAGGTCATCGGTAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTTTCTCCTCCGTTCCGCGAAGCCATCTTCGACATCCTCTACGGCGAAGG
CATTTCCCGTCAGGGCGAAATCGTCGAAATGGGGGTGGCTCACAAGCTGGTCGACAAGTCCGGCGCCTGGTATGCCTACA
AGGGCGAGAAGATCGGCCAGGGCAAGGACAACGCCCGCGAATTCCTGAAAGCCAATCCGGAAATCGCTGCCGAAATTGAA
GCCGGCATCCGCGAAGCGGCCAGCACCAACGTCATCAAGCCGGTGAAGGCAGCCAAGGCCGCCGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.226

90.379

0.752
  recA Pseudomonas stutzeri DSM 10701

75.926

94.461

0.717
  recA Glaesserella parasuis strain SC1401

70.76

99.708

0.706
  recA Neisseria gonorrhoeae MS11

74.074

94.461

0.7
  recA Neisseria gonorrhoeae MS11

74.074

94.461

0.7
  recA Neisseria gonorrhoeae strain FA1090

74.074

94.461

0.7
  recA Acinetobacter baylyi ADP1

72.923

94.752

0.691
  recA Acinetobacter baumannii D1279779

71.077

94.752

0.673
  recA Vibrio cholerae strain A1552

69.231

94.752

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

94.752

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

95.918

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

95.335

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.538

94.752

0.621
  recA Helicobacter pylori 26695

62.538

96.501

0.604
  recA Helicobacter pylori strain NCTC11637

62.236

96.501

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

94.461

0.598
  recA Streptococcus mutans UA159

61.963

95.044

0.589
  recA Streptococcus mitis SK321

62.037

94.461

0.586
  recA Streptococcus mitis NCTC 12261

62.037

94.461

0.586
  recA Streptococcus pneumoniae Rx1

62.037

94.461

0.586
  recA Streptococcus pneumoniae D39

62.037

94.461

0.586
  recA Streptococcus pneumoniae R6

62.037

94.461

0.586
  recA Streptococcus pneumoniae TIGR4

62.037

94.461

0.586
  recA Streptococcus pyogenes NZ131

60.429

95.044

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60.494

94.461

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

92.128

0.563

Multiple sequence alignment