Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHI53_RS08640 Genome accession   NZ_CP150304
Coordinates   1790834..1791877 (+) Length   347 a.a.
NCBI ID   WP_061144684.1    Uniprot ID   A0A109MRV2
Organism   Peribacillus sp. FSL E2-0218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1785834..1796877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI53_RS08615 (MHI53_08615) - 1786257..1786514 (+) 258 WP_061144677.1 DUF3243 domain-containing protein -
  MHI53_RS08620 (MHI53_08620) - 1786752..1787543 (+) 792 WP_057913349.1 DUF3388 domain-containing protein -
  MHI53_RS08625 (MHI53_08625) - 1787552..1788469 (+) 918 WP_340373205.1 RodZ domain-containing protein -
  MHI53_RS08630 (MHI53_08630) pgsA 1788649..1789233 (+) 585 WP_061144679.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI53_RS08635 (MHI53_08635) cinA 1789256..1790488 (+) 1233 WP_340373206.1 competence/damage-inducible protein A Machinery gene
  MHI53_RS08640 (MHI53_08640) recA 1790834..1791877 (+) 1044 WP_061144684.1 recombinase RecA Machinery gene
  MHI53_RS08645 (MHI53_08645) rny 1792233..1793792 (+) 1560 WP_061144685.1 ribonuclease Y -
  MHI53_RS08650 (MHI53_08650) - 1793943..1794740 (+) 798 WP_061144686.1 TIGR00282 family metallophosphoesterase -
  MHI53_RS08655 (MHI53_08655) spoVS 1794929..1795189 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  MHI53_RS08660 (MHI53_08660) - 1795272..1796249 (+) 978 WP_061144687.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37893.99 Da        Isoelectric Point: 4.7334

>NTDB_id=970092 MHI53_RS08640 WP_061144684.1 1790834..1791877(+) (recA) [Peribacillus sp. FSL E2-0218]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGAELDIVLKSGSWYSYNEERVGQGRENAKMFLKENQDIALEISQK
IRDHYNLDGEHELPPEEAEDEHFELLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=970092 MHI53_RS08640 WP_061144684.1 1790834..1791877(+) (recA) [Peribacillus sp. FSL E2-0218]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCTTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCCATTATGAAACT
TGGAGAACAGTCTGATCGAAGGATTTCAACGATTTCAAGTGGTTCATTGGCATTGGATGTAGCATTGGGAGTGGGCGGAT
ATCCAAGGGGACGGGTCATTGAGATATACGGACCTGAAAGCTCAGGTAAAACGACTGTTGCATTACATGCGATTGCAGAA
GTGCAAAAAACTGGCGGTACTGCAGCATTCATTGATGCCGAGCATGCTTTGGATCCAGCCTATTCAGAAAAACTAGGTGT
GAATATCGATGAGTTACTGCTGTCACAGCCCGATACAGGTGAACAAGCCTTGGAAATCGCTGAAGCGCTAGTTCGCAGTG
GAGCGGTGGACATCATTGTCATTGACTCGGTTGCAGCCCTTGTTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGATTCC
CATATGGGTCTGCAAGCCCGGATGATGTCCCAGGCGTTAAGGAAACTATCTGGTGCCATTAATAAATCAAATACCATTGC
CATTTTCATTAACCAAGTCCGTGAAAAAATCGGGGTAATGTTCGGGAATCCGGAAACCACTCCAGGAGGCCGGGCATTGA
AGTTCTACTCGACTGTACGTCTGGAAGTGCGTCGTGCGGAACAGTTAAAACAAGGCAATGAAATCGTCGGTAATAAAACC
AAAATCAAAGTGGTGAAAAACAAAGTTGCGCCGCCATTCCGCCAAGCGGAAGTTGATATCATGTATGGTCAAGGTATTTC
GCAGGAAGGTGAAATCATTGATATGGGTGCAGAGCTTGATATCGTCCTTAAAAGCGGTTCGTGGTATTCATACAACGAAG
AGCGTGTTGGACAAGGACGGGAAAACGCGAAGATGTTCTTGAAAGAAAATCAAGATATCGCTCTGGAGATTTCTCAGAAA
ATCAGGGATCATTATAATCTTGATGGAGAGCATGAGCTGCCGCCAGAGGAAGCGGAAGATGAACATTTTGAATTACTTGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109MRV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.28

94.524

0.816
  recA Latilactobacillus sakei subsp. sakei 23K

72.254

99.712

0.72
  recA Streptococcus pneumoniae R6

67.164

96.542

0.648
  recA Streptococcus pneumoniae TIGR4

67.164

96.542

0.648
  recA Streptococcus mitis NCTC 12261

67.164

96.542

0.648
  recA Streptococcus pneumoniae Rx1

67.164

96.542

0.648
  recA Streptococcus pneumoniae D39

67.164

96.542

0.648
  recA Streptococcus mitis SK321

66.866

96.542

0.646
  recA Streptococcus mutans UA159

67.173

94.813

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.179

96.83

0.631
  recA Streptococcus pyogenes NZ131

66.972

94.236

0.631
  recA Ralstonia pseudosolanacearum GMI1000

69.01

90.202

0.622
  recA Vibrio cholerae strain A1552

66.355

92.507

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.507

0.614
  recA Neisseria gonorrhoeae MS11

66.044

92.507

0.611
  recA Neisseria gonorrhoeae MS11

66.044

92.507

0.611
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.507

0.611
  recA Acinetobacter baumannii D1279779

61.159

99.424

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.524

0.599
  recA Helicobacter pylori strain NCTC11637

60.882

97.983

0.597
  recA Helicobacter pylori 26695

60.882

97.983

0.597
  recA Acinetobacter baylyi ADP1

59.71

99.424

0.594
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Glaesserella parasuis strain SC1401

63.75

92.219

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.236

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.084

0.576

Multiple sequence alignment