Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHI53_RS08635 Genome accession   NZ_CP150304
Coordinates   1789256..1790488 (+) Length   410 a.a.
NCBI ID   WP_340373206.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0218     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1784256..1795488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI53_RS08610 (MHI53_08610) - 1785451..1786176 (+) 726 WP_340373204.1 SDR family oxidoreductase -
  MHI53_RS08615 (MHI53_08615) - 1786257..1786514 (+) 258 WP_061144677.1 DUF3243 domain-containing protein -
  MHI53_RS08620 (MHI53_08620) - 1786752..1787543 (+) 792 WP_057913349.1 DUF3388 domain-containing protein -
  MHI53_RS08625 (MHI53_08625) - 1787552..1788469 (+) 918 WP_340373205.1 RodZ domain-containing protein -
  MHI53_RS08630 (MHI53_08630) pgsA 1788649..1789233 (+) 585 WP_061144679.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI53_RS08635 (MHI53_08635) cinA 1789256..1790488 (+) 1233 WP_340373206.1 competence/damage-inducible protein A Machinery gene
  MHI53_RS08640 (MHI53_08640) recA 1790834..1791877 (+) 1044 WP_061144684.1 recombinase RecA Machinery gene
  MHI53_RS08645 (MHI53_08645) rny 1792233..1793792 (+) 1560 WP_061144685.1 ribonuclease Y -
  MHI53_RS08650 (MHI53_08650) - 1793943..1794740 (+) 798 WP_061144686.1 TIGR00282 family metallophosphoesterase -
  MHI53_RS08655 (MHI53_08655) spoVS 1794929..1795189 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44850.09 Da        Isoelectric Point: 5.3512

>NTDB_id=970091 MHI53_RS08635 WP_340373206.1 1789256..1790488(+) (cinA) [Peribacillus sp. FSL E2-0218]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAQMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFKKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYESIMNKLDKHDRIDSKVLRFFGIGEAELETVIDDLLVNQTNPTIAPLASEGEVTLRITAKDSSKQKCEELILSAE
KEIMDRVGKFYYGTDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVSYTNDAKSSVLGVSGG
IISEHGVVSGECAKEMASNVRKMHDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSREQNRIRSVK
YGCHYLLNDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=970091 MHI53_RS08635 WP_340373206.1 1789256..1790488(+) (cinA) [Peribacillus sp. FSL E2-0218]
ATGGATGCAGAAATCATTGCAGTAGGCTCCGAGCTTCTTTTAGGACAAATCAATAATACTAATGGGAGATTCTTATCACA
GCAGTTTGCCCAAATGGGAATCAATGTTTTTTACCATACTGTGGTTGGGGATAACGATCGTCGTTTGCAGCAAGCAATAG
AGATTGCAGAATCAAGGGCGAACTTGATTGTCTTTACTGGTGGACTAGGCCCTACCAAGGATGATTTAACGAAGGAAACG
ATTGCTCGCCATATTGGCAAGAAACTCGTTTTTAACGATGAAGCCCTGCAATCCATCGAAGCTTACTTTAAAAAACGGGA
GCGGCCGATGACGGAAAATAATAAAAAGCAGGCTCTTGTTTTAGAAGGCAGTGAAGTGCTGGCAAACGATCATGGCATGG
CACCGGGAATGGTTTTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGGCCACCTAGTGAAATGGAACCGATGTTT
TTAAGTTATGGCTATGAATCGATCATGAATAAATTGGATAAGCATGATCGAATCGATTCGAAAGTACTTCGATTCTTTGG
CATCGGTGAAGCGGAATTGGAAACGGTGATTGATGATCTACTTGTCAATCAAACGAATCCGACGATTGCACCGTTGGCAT
CCGAAGGCGAAGTGACATTAAGGATCACAGCGAAGGACTCGTCCAAACAAAAATGCGAAGAGCTCATTTTATCCGCAGAA
AAAGAAATTATGGACAGGGTTGGGAAGTTTTACTACGGAACTGATAATACTTCGCTTATAAAGGAACTTGTAAAAGAATT
GACGGTCCGCAAGCTTTCGATTGCGGCGGCGGAAAGCTTGACCGGGGGGATGTTTCAGGAACAGTTGACAACCATCCCGG
GTGCCGGTAAAGTCTTCAAGGGCGGCATTGTGAGTTATACGAATGATGCGAAGTCGAGTGTCCTCGGCGTCAGCGGCGGA
ATCATTTCCGAGCATGGTGTGGTCAGCGGTGAGTGTGCCAAGGAAATGGCTTCCAATGTCAGGAAAATGCACGATGCGGA
TGTGGGCATAAGCTTCACGGGTGTTGCAGGGCCCGATGAACAAGAAGGCAAGCCTGTAGGTACCGTATTCATTGGCATTT
CGTATCGTGATGGAAACACGCACTTTAAAGAGTTGAATCTATCAGGCAGCAGGGAGCAGAACCGCATCAGAAGCGTCAAG
TATGGCTGTCATTACTTGCTTAATGATTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.108

99.512

0.568
  cinA Streptococcus pneumoniae TIGR4

45.098

99.512

0.449
  cinA Streptococcus pneumoniae Rx1

44.608

99.512

0.444
  cinA Streptococcus pneumoniae R6

44.608

99.512

0.444
  cinA Streptococcus mitis SK321

44.363

99.512

0.441
  cinA Streptococcus pneumoniae D39

44.363

99.512

0.441
  cinA Streptococcus mitis NCTC 12261

44.118

99.512

0.439
  cinA Streptococcus mutans UA159

43.564

98.537

0.429
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378

Multiple sequence alignment