Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHB44_RS06125 Genome accession   NZ_CP150292
Coordinates   1320337..1321398 (+) Length   353 a.a.
NCBI ID   WP_341301982.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL H8-0500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315337..1326398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB44_RS06100 (MHB44_06100) - 1316075..1316332 (+) 258 WP_053993988.1 DUF3243 domain-containing protein -
  MHB44_RS06105 (MHB44_06105) - 1316550..1317335 (+) 786 WP_053993989.1 DUF3388 domain-containing protein -
  MHB44_RS06110 (MHB44_06110) - 1317352..1318272 (+) 921 WP_341301979.1 RodZ domain-containing protein -
  MHB44_RS06115 (MHB44_06115) pgsA 1318320..1318898 (+) 579 WP_341301980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB44_RS06120 (MHB44_06120) cinA 1318916..1320175 (+) 1260 WP_341301981.1 competence/damage-inducible protein A Machinery gene
  MHB44_RS06125 (MHB44_06125) recA 1320337..1321398 (+) 1062 WP_341301982.1 recombinase RecA Machinery gene
  MHB44_RS06130 (MHB44_06130) rny 1322076..1323635 (+) 1560 WP_053993993.1 ribonuclease Y -
  MHB44_RS06135 (MHB44_06135) - 1323841..1324638 (+) 798 WP_341301983.1 TIGR00282 family metallophosphoesterase -
  MHB44_RS06140 (MHB44_06140) - 1324806..1325072 (+) 267 WP_004224903.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38029.20 Da        Isoelectric Point: 4.7412

>NTDB_id=969730 MHB44_RS06125 WP_341301982.1 1320337..1321398(+) (recA) [Lysinibacillus sp. FSL H8-0500]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KVKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKEHPAVMEEIANK
IRSSYGIAAASYTIAAHEEEEMDEELLSLLEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=969730 MHB44_RS06125 WP_341301982.1 1320337..1321398(+) (recA) [Lysinibacillus sp. FSL H8-0500]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGCTAAAACAAATTGAAAAGAATTTTGGGAAAGGTTCCATCATGAAGCT
TGGGGAAAAAACCGATTTAGAAATTGCGACATCTTCAAGCGGATCGTTAGCACTTGATGCAGCATTAGGCGTAGGTGGTT
ATCCACGTGGACGTATTATCGAAGTATATGGTCCTGAATCATCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAA
GTGCAAGCGTCAGGTGGACAAGCAGCATTTATCGATGCTGAGCATGCGCTGGACCCAATTTATGCACAAAAATTAGGGGT
TAATATTGATGAGCTACTATTATCACAGCCAGATACAGGAGAACAGGCACTTGAAATCGCAGAAGCTCTAGTACGCAGTG
GAGCGATTGACATTATTGTTATTGACTCTGTCGCAGCATTAGTGCCAAAAGCAGAAATTGAAGGAGATATGGGTGATTCT
CATGTCGGTTTACAAGCTCGTTTAATGTCACAAGCTTTACGTAAACTTTCAGGAGCGATTAATAAATCGAAAACAATTGC
TATTTTTATTAACCAAATTCGTGAAAAAATTGGTGTGATGTTTGGTAATCCAGAGACAACACCGGGTGGACGTGCGCTTA
AATTCTACAGCTCTGTGCGTTTAGAGGTGCGTCGTGCAGAGGCAATTAAGCAAGGCAATGATATTATGGGTAACCGCACA
AAGGTAAAAATTGTGAAAAATAAAGTAGCTCCACCTTTCCGTACAGCAGAGGTAGATATTATGTATGGAGAAGGGATTTC
TAAAGAGGGCGAAACAGTCGATTTAGGTGTAGAATTAGATATTGTGCAAAAAAGTGGTTCTTGGTACGCATATGGAGATG
AGCGTTTAGGTCAAGGCCGAGAAAATGCGAAACAATATTTAAAAGAACATCCTGCCGTAATGGAGGAAATCGCTAACAAA
ATTCGCTCTTCCTATGGTATTGCTGCTGCTTCTTATACAATTGCTGCACATGAAGAGGAAGAAATGGATGAAGAATTACT
GTCACTTCTCGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.635

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.351

0.7
  recA Streptococcus pyogenes NZ131

64.873

100

0.649
  recA Streptococcus pneumoniae TIGR4

68.182

93.484

0.637
  recA Streptococcus pneumoniae R6

68.182

93.484

0.637
  recA Streptococcus pneumoniae Rx1

68.182

93.484

0.637
  recA Streptococcus pneumoniae D39

68.182

93.484

0.637
  recA Streptococcus mutans UA159

64.183

98.867

0.635
  recA Streptococcus mitis SK321

67.576

93.484

0.632
  recA Streptococcus mitis NCTC 12261

67.273

93.484

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.484

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.653

93.201

0.612
  recA Neisseria gonorrhoeae MS11

65.653

93.201

0.612
  recA Neisseria gonorrhoeae MS11

65.653

93.201

0.612
  recA Acinetobacter baylyi ADP1

61.782

98.584

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.167

0.603
  recA Helicobacter pylori strain NCTC11637

64.923

92.068

0.598
  recA Ralstonia pseudosolanacearum GMI1000

64.22

92.635

0.595
  recA Helicobacter pylori 26695

64.615

92.068

0.595
  recA Glaesserella parasuis strain SC1401

59.429

99.15

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.351

0.589
  recA Acinetobacter baumannii D1279779

60.997

96.601

0.589
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Vibrio cholerae strain A1552

63.125

90.652

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.125

90.652

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.501

0.569

Multiple sequence alignment