Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHB44_RS06120 Genome accession   NZ_CP150292
Coordinates   1318916..1320175 (+) Length   419 a.a.
NCBI ID   WP_341301981.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL H8-0500     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1313916..1325175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB44_RS06090 (MHB44_06090) - 1314004..1315305 (+) 1302 WP_341301977.1 pitrilysin family protein -
  MHB44_RS06095 (MHB44_06095) - 1315302..1316030 (+) 729 WP_341301978.1 SDR family oxidoreductase -
  MHB44_RS06100 (MHB44_06100) - 1316075..1316332 (+) 258 WP_053993988.1 DUF3243 domain-containing protein -
  MHB44_RS06105 (MHB44_06105) - 1316550..1317335 (+) 786 WP_053993989.1 DUF3388 domain-containing protein -
  MHB44_RS06110 (MHB44_06110) - 1317352..1318272 (+) 921 WP_341301979.1 RodZ domain-containing protein -
  MHB44_RS06115 (MHB44_06115) pgsA 1318320..1318898 (+) 579 WP_341301980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB44_RS06120 (MHB44_06120) cinA 1318916..1320175 (+) 1260 WP_341301981.1 competence/damage-inducible protein A Machinery gene
  MHB44_RS06125 (MHB44_06125) recA 1320337..1321398 (+) 1062 WP_341301982.1 recombinase RecA Machinery gene
  MHB44_RS06130 (MHB44_06130) rny 1322076..1323635 (+) 1560 WP_053993993.1 ribonuclease Y -
  MHB44_RS06135 (MHB44_06135) - 1323841..1324638 (+) 798 WP_341301983.1 TIGR00282 family metallophosphoesterase -
  MHB44_RS06140 (MHB44_06140) - 1324806..1325072 (+) 267 WP_004224903.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45484.97 Da        Isoelectric Point: 5.6156

>NTDB_id=969729 MHB44_RS06120 WP_341301981.1 1318916..1320175(+) (cinA) [Lysinibacillus sp. FSL H8-0500]
MNAEILAVGSELLLGQITNTNAKFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHVGVQLEMDEVALTYIEQFFAKRGRSMTDNNRKQALVLTGSEVLANHHGMAPGMIFKKDHRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGTIASHVMRFYGIGEAELEVRVQDILDRQTNPTVAPLASDGEVTLRVTAKAQTEQQAQQLIDAKV
AEIQALVGNYQYGVNDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYTADAKVKQLGIAQK
LIDTHGVVSSECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEKPLTYLLHLSGMRNTNRLRAVK
FACHYLMQQLEERGYKKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=969729 MHB44_RS06120 WP_341301981.1 1318916..1320175(+) (cinA) [Lysinibacillus sp. FSL H8-0500]
ATGAATGCTGAAATTCTTGCAGTTGGCTCTGAACTATTATTAGGTCAAATTACGAATACAAATGCAAAATTTATCTCGAG
CCAGCTTTCTGAGCTAGGCATAAATGTTTTTTACCATACTGTAGTGGGCGATAATGCTAAACGTTTAGAACAGGCTATTG
AAGTGGCCGAGTCCCGTGCAGATTTAATTATTTTTTCGGGAGGGCTTGGTCCTACGAAGGATGATTTAACAAAGGAAACA
ATCGCTCGTCATGTTGGTGTCCAGCTTGAAATGGACGAAGTTGCCTTAACGTATATTGAGCAATTTTTTGCTAAACGAGG
CCGTTCAATGACGGACAATAATCGTAAACAGGCATTGGTTTTAACAGGAAGTGAAGTGTTAGCAAATCATCATGGAATGG
CGCCTGGCATGATTTTTAAAAAGGATCACCGCACTTATATTTTATTGCCAGGACCACCAAAAGAGCTAGAGCCAATGTTC
CAATTTGAGGCAAAGCCAAAGCTCGCTGCCATGCTTAATGATGGGGGAACGATTGCTTCTCATGTTATGCGCTTTTATGG
AATTGGTGAAGCAGAGCTTGAAGTTCGTGTTCAAGATATTTTAGATAGACAAACAAATCCAACTGTTGCACCACTCGCCT
CAGATGGAGAGGTAACATTGCGTGTAACAGCTAAGGCACAAACAGAGCAGCAAGCACAGCAGCTGATTGACGCCAAAGTT
GCAGAGATACAGGCACTTGTGGGTAACTATCAATATGGTGTCAATGATGATTCGCTTGCCTCCAAAACGGTTGAAATGCT
GCTGGATAATGAGCTAACAATTGCTGCTGCGGAAAGTTTAACAGCTGGGTTATTTCAATCTGAGCTTGCGGAAATTCCTG
GGGTAGGCAATGCGCTGATAGGAGGCGTTGTTACCTATACAGCTGATGCGAAAGTAAAACAGCTCGGCATTGCACAAAAA
CTAATTGATACACATGGTGTGGTAAGTAGCGAGTGTGCAGCGGCAATGGCAAGTGCTGTGCGTGAAAAATTTGCTACAAA
TATTGGGATTGGTCTTACAGGAGAAGCAGGTCCCACAGCACATGATCATCAGCCAGTAGGTACAGTTTGGATTGGTATTG
CCATTAATGATGAAAAGCCTCTTACATATTTACTACACCTATCTGGTATGCGGAATACGAATCGACTGCGCGCAGTGAAA
TTTGCCTGTCATTATTTAATGCAACAGTTAGAAGAGCGTGGCTATAAAAAGCGTTATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.095

98.091

0.501
  cinA Streptococcus mitis SK321

45.312

91.647

0.415
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.792

91.647

0.411
  cinA Streptococcus mutans UA159

41.446

99.045

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408

Multiple sequence alignment