Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHH88_RS05560 Genome accession   NZ_CP150264
Coordinates   1178800..1179864 (+) Length   354 a.a.
NCBI ID   WP_069510054.1    Uniprot ID   A0A2S5D3E3
Organism   Lysinibacillus sp. FSL K6-3209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1173800..1184864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH88_RS05535 (MHH88_05535) - 1174441..1174698 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  MHH88_RS05540 (MHH88_05540) - 1174926..1175714 (+) 789 WP_103977636.1 DUF3388 domain-containing protein -
  MHH88_RS05545 (MHH88_05545) - 1175731..1176642 (+) 912 WP_172583013.1 RodZ domain-containing protein -
  MHH88_RS05550 (MHH88_05550) pgsA 1176690..1177268 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHH88_RS05555 (MHH88_05555) cinA 1177286..1178545 (+) 1260 WP_339261756.1 competence/damage-inducible protein A Machinery gene
  MHH88_RS05560 (MHH88_05560) recA 1178800..1179864 (+) 1065 WP_069510054.1 recombinase RecA Machinery gene
  MHH88_RS05565 (MHH88_05565) rny 1180311..1181870 (+) 1560 WP_069510052.1 ribonuclease Y -
  MHH88_RS05570 (MHH88_05570) - 1182208..1182906 (+) 699 WP_339261757.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  MHH88_RS05575 (MHH88_05575) - 1182938..1183642 (+) 705 WP_339261758.1 CpsD/CapB family tyrosine-protein kinase -
  MHH88_RS05580 (MHH88_05580) - 1183674..1184438 (+) 765 WP_339261759.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38216.48 Da        Isoelectric Point: 4.7884

>NTDB_id=968640 MHH88_RS05560 WP_069510054.1 1178800..1179864(+) (recA) [Lysinibacillus sp. FSL K6-3209]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLDEIANK
IRSSYGIAAQSYTIAAHDDEEMDEELMLLLEDEK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=968640 MHH88_RS05560 WP_069510054.1 1178800..1179864(+) (recA) [Lysinibacillus sp. FSL K6-3209]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAGAAGAATTTCGGTAAAGGCTCTATCATGAAGCT
GGGCGAAAAAACAGATTTAGAAATCGCTACATCTTCAAGTGGTTCGCTAGCACTTGATGCAGCATTAGGTGTTGGTGGCT
ATCCACGTGGACGTATTATTGAAGTATATGGTCCGGAATCATCAGGTAAAACAACCGTTGCGCTTCATGCTATTGCGGAA
GTACAAGCTAAGGGCGGACAAGCTGCATTTATCGATGCTGAGCATGCATTAGATCCAATTTACGCACAAAAATTAGGCGT
AAATATTGATGAACTATTATTATCTCAACCAGATACAGGTGAGCAAGCGCTGGAAATTGCAGAAGCATTAGTGCGTAGTG
GTGCGATTGATATTATCGTTATTGACTCTGTTGCAGCGCTCGTACCAAAAGCTGAAATCGAAGGCGATATGGGTGACTCT
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCTATCAATAAATCAAAAACAATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTTATGTTCGGTAACCCAGAAACAACTCCTGGTGGTCGTGCGCTAA
AATTCTATAGTTCCGTCCGTTTAGAAGTACGTCGTGCTGAAGCAATCAAACAAGGTAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTTAAAAATAAAGTGGCACCACCATTCCGTACTGCTGAAGTTGATATTATGTATGGTGAAGGGATTTC
TAAAGAAGGCGAAACGGTTGATTTAGGTGTAGAATTAGATATCGTTCAAAAAAGTGGATCTTGGTATGCGTATGGCGATG
AGCGTCTAGGCCAAGGTCGTGAAAACGCAAAACAATATTTAAAAGAAAACCCTGCTGTTTTAGATGAAATCGCAAATAAA
ATTCGTTCGTCTTACGGCATTGCTGCACAATCGTATACAATTGCTGCACATGATGACGAGGAAATGGATGAAGAGTTAAT
GCTTCTTCTTGAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5D3E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.373

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

76.074

92.09

0.701
  recA Streptococcus mitis NCTC 12261

64.82

100

0.661
  recA Streptococcus mitis SK321

64.82

100

0.661
  recA Streptococcus mutans UA159

63.889

100

0.65
  recA Streptococcus pneumoniae R6

68.485

93.22

0.638
  recA Streptococcus pneumoniae Rx1

68.485

93.22

0.638
  recA Streptococcus pneumoniae D39

68.485

93.22

0.638
  recA Streptococcus pneumoniae TIGR4

68.485

93.22

0.638
  recA Streptococcus pyogenes NZ131

67.988

92.655

0.63
  recA Lactococcus lactis subsp. cremoris KW2

66.97

93.22

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Helicobacter pylori strain NCTC11637

62.865

96.61

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

96.893

0.605
  recA Helicobacter pylori 26695

62.573

96.61

0.605
  recA Acinetobacter baylyi ADP1

61.494

98.305

0.605
  recA Glaesserella parasuis strain SC1401

60.458

98.588

0.596
  recA Acinetobacter baumannii D1279779

60.172

98.588

0.593
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

92.09

0.585
  recA Vibrio cholerae strain A1552

63.75

90.395

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.395

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Pseudomonas stutzeri DSM 10701

62.928

90.678

0.571

Multiple sequence alignment